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Molecular and Cellular Biology, January 2005, p. 779-788, Vol. 25, No. 2
0270-7306/05/$08.00+0 doi:10.1128/MCB.25.2.779-788.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Fanni V. Gergely,2,
Mark J. Arends,3
Bee Ling Ng,1
David Tannahill,1
Roland Kanaar,4
Andrea Markus,5
Brian J. Morris,5 and
Allan Bradley1*
The Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire,1 Wellcome/CRC, Institute of Cancer and Developmental Biology,2 Department of Pathology, University of Cambridge, Cambridge, United Kingdom,3 Department of Cell Biology and Genetics, Erasmus MC-Daniel, Rotterdam, The Netherlands,4 Basic and Clinical Genomics Laboratory, Department of Physiology, The University of Sydney, Sydney, New South Wales, Australia5
Received 7 July 2004/ Returned for modification 4 August 2004/ Accepted 21 October 2004
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In the present study we set out to investigate the function of Brctx, an uncharacterized member of the BRCT domain-containing family of proteins. The human homologue of Brctx is located on chromosome 5q15, a region of the genome frequently rearranged in cancers of the breast (10), bladder (27), ovary (33), and lung (17); the tumor suppressor gene at this locus has not been identified. Here we use expression profiling, protein interaction, and targeted mutagenesis of Brctx to gain clues about its function.
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Expression profiling of Brctx. Northern blotting was performed on mouse tissue Northern blots containing whole RNA with the full-length Brctx cDNA as a probe. RT-PCR was performed on a mouse rapid scan panel (Origene Technologies) with the primers Akexon1-2A (5'-GGA AGA TAG TGC CAC AAA ACA TAT CAT CC-3') and Akexon1-2B (5'-TGC TGC ACA AGC TGC TAA AAA CTT CTC-3') spanning exons 1 and 2 of Brctx and ß-actin primers (provided by the manufacturer). These reactions were performed with 50 µl of PCR Supermix (Invitrogen). For Brctx, 35 cycles of 20 s at 94°C, 1 min at 63°C, and 1 min at 72°C were performed. ß-actin amplification was performed using 37 cycles of 20 s at 94°C, 1 min at 53°C, and 1 min at 72°C. Primer pairs were designed to flank introns to ensure that there was no amplification of genomic contaminants. The entire reaction was resolved in a 2% agarose gel in 1x Tris-acetate-EDTA (TAE). mRNA in situ hybridization for Brctx expression was performed with an automated Ventana Discovery instrument (Ventana Medical Instruments, Tucson, Ariz.) according to the manufacturer's instructions. Briefly, tissues were fixed in 4% paraformaldehyde in phosphate-buffered saline (PBS). After 24 h they were washed with PBS and dehydrated through a methanol series. Tissues were then embedded in paraffin and 8-µm sections were cut. These sections were deparaffinized, fixed, acid treated, and then protease treated before being hybridized with a digoxigenin-labeled antisense probe (50 ng/slide) for 6 h. The signal was detected with an antidigoxigenin primary antibody (Jackson Immunoresearch Laboratories, West Grove, Pa.), followed by streptavidin-conjugated alkaline phosphatase secondary antibodies and finally by incubation with nitroblue tetrazolium chloride-5-bromo-4-chloro-3-indolylphosphate toluidine salt substrate solution for 6 h on the instrument. Sections were then counterstained with neutral red. The antisense Brctx probe (full-length cDNA) was transcribed from an EcoRI-linearized pBS plasmid by using T7 polymerase. An antibody to human BRCTx (peptide; GFKMEEKEALVKLLLK) was raised in rabbits (Alpha Diagnostics, San Antonio, Tex).
Subcellular localization and confocal microscopy.
For BRCTx localization studies, the full-length Brctx cDNA was fused to enhanced green fluorescent protein (EGFP) in pEGFP-C2 (Clontech, Palo Alto, Calif.) to make BRCTx-EGFP. A deletion mutant containing the first 100 amino acids (100BRCTx-EGFP) of BRCTx was generated by PCR with the reverse primer 5'-AAA AAA AAA AGG ATC CCT AAT AAT GGG AGT CTT TTT CAA TTT TAT ATC CCC-3' in combination with the forward primer 5'-AAA AAA AAA AAA GCT TGA TGG AAG ATA GTG CCA CAA AAC ATA TCA TC-3'. Reactions were performed with PCR Supermix High Fidelity as described for the cloning of the full-length Brctx. These products were cloned in frame in pEGFP-C2 and confirmed by sequencing. HeLa cells or 293HEK cells were cultured in Dulbecco modified Eagle medium with 10% fetal calf serum (Invitrogen) on poly-L-lysine-coated chamber slides (BD Biosciences, Palo Alto, Calif.). Transfections were carried out by using Superfect (Qiagen, Germantown, Md.) or Lipofectamine (Invitrogen) according to the manufacturer's instructions. After 24 h, the cells were fixed with methanol at 20°C and stained. Pericentrin and
-tubulin staining was performed with antibodies PRB-432C from Covance (Dever, Pa.) and GTU-88 from Sigma (Dorset, United Kingdom), respectively. Imaging was performed by using a Bio-Rad scanning confocal microscope or a Zeiss Axioplan 2 imaging microscope with an Axiocam HRm camera. Images were imported into Adobe Photoshop 6.0 and adjusted to use the full range of pixel intensities. For colocalization of hRAD18 and BRCTx, a Flag-tagged hRAD18 cDNA (22) was used with the full-length BRCTx-EGFP fusion construct as described above. Flag-hRAD18 fusion proteins were detected by using M2 monoclonal antibody from Sigma.
Response of BRCTx-EGFP fusion proteins to DNA damage in V79 cells. A hamster V79 cell line stably expressing a BRCTx-EGFP fusion protein was generated by transfection of the full-length BRCTx-EGFP construct (described previously), and selection for stable integrants in G418 (Invitrogen). Appropriate expression of the chimeric protein was confirmed by Western blotting (data not shown). Relocalization experiments were performed as described previously (6). Cell lines stably expressing RAD51-EGFP were used as a control in all experiments (6) (data not shown).
Yeast two-hybrid analysis and coimmunoprecipitation. The budding yeast Saccharomyces cerevisiae AH109 (11) was cultured in YPAD (1% [wt/vol] yeast extract, 2% [wt/vol] peptone, 0.003% [wt/vol] adenine, 2% [wt/vol] dextrose) and transformed with the plasmid pGBKT7-Brctx containing the full-length Brctx cDNA. Activation domain plasmids, in pAct2 (Clontech), were transformed into Y187 (9). AH109 and Y187 were mated and selection performed on semisolid synthetic defined medium supplemented with kanamycin (30 µg/ml) for 1 week at 30°C (1, 2). Transformants were then transferred onto membranes for assessment of ß-galactosidase expression by a filter assay (34). An hRAD18 cDNA was isolated by screening a pretransformed pAct/Y187 fetal brain cDNA library containing 2 x 106 independent cDNA clones (Clontech). Coimmunoprecipitations were performed with Flag-tagged hRAD18 cDNA or hRAD18 deletion mutants (22) and the full-length tagged Brctx-EGFP plasmid in 293T cells.
Generation of Brctx-deficient mice. The Brctx targeting vector was constructed by using the PGK-neoF2L2DTA backbone (kindly provided by Phil Soriano, Fred Hutchinson Cancer Research Center, Seattle, Wash.). Vector arms were amplified from the PAC clone RP21-371G10, derived from 129S6/SvEvTac mouse DNA (24). Reactions were performed in 50 µl of PCR Supermix High Fidelity with 15 cycles of 20 s at 94°C, 1 min at 63°C, and 6 min at 68°C. The 5' arm of the vector was amplified with the primers 5'-AAA AAA AAG CGG CCG CAA TAC ATT CAA ATG CTT TAA CAA TTT ATA CCT CAA AAC-3' and 5'-AAA AAA AAG CGG CCG CCT AAC AGC TGG CCA AAA AGG CGA GCT CCA TAC AGA AGA TAG CAG ATG TTA AAC ATT ATG C-3' and cloned into the NotI site of the vector. The 3' arm of the targeting vector was amplified by using 5'-AAA AAA AAG CTT CAC GCT TCC TCA CCA CTG AGA CAC CCA GAG CAA AC-3' and 5'-AAA AAA AAG CTT TCT GAT CTA ACG AAG AAG CAA CAT AAT CTA TAG GAC-3'. This fragment was cloned by using XbaI and XhoI into the NheI and SalI sites of PGK-NeoF2L2DTA. Then, 25 µg of SacII-linearized DNA was electroporated into AB2.2, 129S7 embryonic stem cells. Confirmation of targeting and genotyping was performed by Southern blotting on BglI-digested genomic DNA with a 5' probe amplified by using the primers 5'-GTA TGT TCT GAA GTA TGG AGG ACT GAG-3' and 5'-TCT TCA AAC ATG TGC CAG TAC TGG C-3' and a 3' probe amplified by using the primers 5'-CAC TTT TAG CTT CTG AAC ATC TCT CAC TCC C-3' and 5'-TAT GTG GGT GGA CAT GCA AGC AAG CAC-3'. Blastocyst and chimeric mice were produced as described previously (26). All experiments were performed with mice on a mixed 129S7/SvEvBrd and C57BL/6J-Tyrc-Brd background. Mice were housed in accordance with Home Office regulations (United Kingdom).
Micronuclei assay, T-cell analysis, and thymocyte cell cycle studies. For the micronucleus assay blood was collected from adult mice (6 to 8 weeks old) by cardiac puncture during terminal anesthesia and immediately fixed in 80°C methanol overnight. DNA, CD71 antibody staining, and fluorescence-activated cell sorting (FACS) analyses were performed with reagents from Litron Laboratories (Rochester, N.Y.). A total of 50,000 red cells from each animal were examined. For analysis of T cells, whole spleens and thymuses were prepared as described previously (15, 31) and stained with CD4-propidium iodide (PI) and CD8-fluorescein isothiocyanate (FITC) antibodies purchased from Pharmingen (Palo Alto, Calif.). Then, 10,000 cells were examined from each organ by FACS. For cell cycle analysis, thymuses were collected from adult (6- to 8-week-old) Brctx-null and wild-type animals, treated with RNase A, and labeled with PI (7). All FACS data analysis was performed by using WinMDI 2.8 software.
Histology and organ analysis. Tissues were collected and fixed in 10% neutral buffered formalin, processed, and stained with hematoxylin and eosin by using standard methods (19). Organ weights were recorded from between four to six animals of each sex at 8 weeks of age.
DNA repair and cell growth assays. Mouse embryonic fibroblasts (MEFs) were prepared as described previously (23, 28) from embryonic day 13.5 embryos. DNA repair and cell growth assays were performed on exponentially growing MEFs between passages two and five. Cells were seeded into gelatinized 96-well plates at a density of 4,000 cells/well the day before treatment. However, ionizing radiation (IR) treatment was performed on cells in suspension prior to plating. UV was delivered by using 254 nm, 40-W/m2 germicidal bulbs. Methyl methanesulfonate (MMS) was delivered to cells in warmed medium for 1 h and then washed off with warmed medium. Controls were treated with dimethyl sulfoxide, which is the vehicle for MMS. Mitomycin C (MMC) was dissolved in medium, and cells were fed daily at various doses. MMS and MMC were purchased from Sigma. MTT assays were performed on cells 5 days after treatment with CellTiter reagent (Promega, Madison, Wis.) according to the manufacturer's recommendations. A minimum of 12 wells were analyzed and averaged for each data point at each dose from three independent experiments for MMC and IR and five experiments for MMS and UV. For cell growth assays, MEFs were seeded at a density of 1.5 x 106/10-cm plate at day 0. Cells were counted daily using a Coulter counter (Beckman Coulter, Fullerton, Calif.). The data were collected from duplicate cell counts from three independent experiments.
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FIG. 1. BRCTx is highly conserved and ubiquitously expressed. (A) Alignment of BRCTx homologues and splice variants from human mouse and rat reveals a high level of conservation. This alignment was generated by using contiguous cDNA sequences rather than assembled cDNAs. The BRCT domain is underlined in red. (B) Human BRCTx is a protein of ca. 36 kDa. (C) Northern blotting of mouse RNA illustrates strong expression of Brctx in the testis. (D) RT-PCR expression profiling of Brctx shows ubiquitous expression. ß-actin is the internal control.
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-tubulin or pericentrin, which are markers of the centrosome, and BRCTx shows that these proteins colocalize in ca. 10 to 15% of cells (Fig. 2). To determine the domain of the protein controlling localization, we generated a truncation mutant (100BRCTx-EGFP) of BRCTx containing the first 100 amino acids (BRCT domain) of the protein. This truncation mutant colocalized with
-tubulin (Fig. 2), in some cells, suggesting that the BRCT domain of BRCTx is responsible for its centrosomal localization. In situ hybridization for Brctx in mouse testis revealed that it is mainly expressed in spermatocytes (Fig. 3). Sections were also hybridized with probes against Gli-1, which mainly stains germ cells and a subset of pachytene spermatocytes, and SSh, which does not stain the testis.
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FIG. 2. BRCTx localizes mainly to the nucleus and in some cells to the centrosome. (A) BRCTx fusions are appropriately expressed as illustrated by this Western blot. (B) BRCTx-EGFP fusion proteins localize to the nucleus and in some cells (10 to 15%) colocalizes with -tubulin and pericentrin, which are centrosomal proteins. Some scant staining of BRCTx-EGFP was observed in the cytoplasm. (C) The BRCT domain of BRCTx (100BRCTx-EGFP) mediates the localization of this protein to the centrosome (arrow).
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FIG. 3. In situ hybridization for Brctx in adult testis. In situ hybridization revealed expression of Brctx in spermatocytes. (Inset) High-power view of testis section showing blue cytoplasmic RNA staining. Expression of Gli-1 which stains spermatocytes and germ cells, and Shh which does not stain the testis, was also assessed. BRCTx/ refers to tissue from a Brctx knockout animal.
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and was implicated in recruiting pol
to sites of DNA damage by protein-protein interaction and by PCNA monoubiquitination (39).
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FIG. 4. BRCTx binds to hRAD18 in yeast two-hybrid and immunoprecipitation assays, and these proteins colocalize in the nucleus. (A) Screening of a fetal brain cDNA library isolated a cDNA clone of hRAD18. This interaction was confirmed by growth on selective medium (i) and by the LacZ assay (ii). (B) The interaction between BRCTx and hRAD18 was confirmed by coimmunoprecipitation. Complexes were precipitated with Flag antibodies on agarose beads. A specific product of the correct size was observed in three independent experiments. hRAD18 does not interact with the N-terminal BRCT domain (100BRCTx-EGFP). Flag-BAP (bacterial alkaline phosphatase) was used as a negative control. (C) Structure of hRAD18 deletion mutants. (D) BRCTx interacts with the hRAD18 Flag D-SAP and Flag D-Zinc fusion proteins. (E) BRCTx and hRAD18 colocalize in the nucleus. Both proteins appeared to localize to the centrosome in some cells but in the majority of cases are distributed evenly throughout the nucleus. Arrow indicates centrosomes.
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Targeted disruption of Brctx. We knocked out Brctx in embryonic stem cells by using a vector designed to delete the first two coding exons (Fig. 5A). Homozygous null animals were obtained at expected Mendelian ratios from interbreeding Brctx heterozygotes (Fig. 5B). Test matings revealed that both Brctx-null males and females were fertile. Disruption of the gene was confirmed by RT-PCR performed on testis cDNA (Fig. 5C) and by in situ hybridization on testis sections (Fig. 3). RT-PCR revealed that Brctx transcripts were produced from the mutant allele but these were fusions between the 5' untranslated region (UTR; exon 1) and exon 5. This mutant mRNA transcript does not produce a truncated form of BRCTx because it lacks an in-frame start codons.
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FIG. 5. Targeted disruption of Brctx in mice. (A) Brctx was disrupted by recombination of a PGK-neo cassette with the first two coding exons resulting in disruption of the BRCT domain. (B) Diagnostic Southern blotting performed on mouse tail DNA by using external probes 5' and 3' of the targeting vector. (C) RT-PCR performed on testis cDNA from wild-type WT (+/+) and Brctx-null (/) animals revealed that / animals had a truncated Brctx transcript formed by the fusion of the 5'UTR (exon 1) with exon 5. This transcript lacks in-frame start codons for BRCTx. ß-actin and ethidium bromide were used as internal controls for RNA quality.
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FIG. 6. Analysis of thymic and splenic T-lymphocytes and of organ and body weights in Brctx-null and wild-type animals. Body (A) and organ (B) weights from Brctx-null and wild-type animals are indicated. Adult animals, 6 to 8 weeks of age, were weighed at necropsy when organs were collected. T, thymus; S, spleen. The data are presented as means ± standard deviations. (C) Spleens and thymuses were taken from adult animals and stained with CD4-PI and CD8-FITC. A minimum of 10,000 events were analyzed from each organ. The data are presented as means ± the standard deviations. (D) PI cell cycle of thymocytes.
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FIG. 7. Assessment of genomic instability. Micronucleus assays on blood from Brctx-null (/) and wild-type (+/+) animals were performed. Peripheral blood was stained with CD71-FITC antibodies and with PI, which stains DNA. The data represent analyses of blood from five animals, 8 to 10 weeks of age, of each genotype (mean ± the standard deviation). A minimum of 50,000 events was analyzed for each sample. Red cell subcompartments are indicated. Results for reticulocytes (Ret), normochromatic erythrocytes (NCE), nucleated reticulocytes (MN-Ret), and nucleated normochromatic erythrocytes (MN-NCE) are shown. Bloom (Blm)-deficient mice (14), were used as a positive control (data not shown).
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FIG. 8. Growth and DNA repair characteristics of Brctx-null and wild-type cells. (A) Growth curve of P2 MEFs derived from Brctx-null and wild-type embryonic day 13.5 embryos. Symbols: , wild-type (WT) cells; , Brctx-null cells. Cell counts were performed in duplicate at intervals of 24 h. The data represent means ± the standard deviations of three independent experiments. (B) Role of Brctx in DNA repair. The data for MEF experiments represent the mean ± the standard errors of the mean for MTT assays in 96-well plate format. Treatments: I, UV irradiation; II, IR; III, MMS; IV, MMC. The data were normalized to untreated cells of the same genotype. (C) BRCTx-EGFP fusion proteins do not relocalize in response to DNA damage. Stable hamster V79 cells expressing BRCTx-EGFP fusion proteins were treated with DNA-damaging agents as indicated. At 24 h after exposure, cells were stained with DAPI and examined by immunofluorescence. The data are representative of two independent experiments.
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At this stage it is not possible to determine whether Brctx plays a role in tumorigenesis. It is interesting that chromosome 5q15, where BRCTX resides, has recently been shown to be a hotspot for rearrangements in p53-negative tumors (10). It is compelling to speculate that there is some interaction between BRCTX and p53, which may explain the rearrangement of 5q15 observed in tumor samples.
We thank Lubbertus Mulder, Mandy van der Rakt, Lucy Martin, LuAnn McKinney, Hideo Hishitani, John Schimenti, Jos Jonkers, K. J. Patel, William Wang, Graham Bignell, Fergus Lippi, Laura Harris, and Alan Lehmann for reagents and helpful discussions; Evelyn Grau for microinjection; and Kate Abbey for animal care.
L.V.D.W. and F.V.G. contributed equally to this study. ![]()
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