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Molecular and Cellular Biology, February 2005, p. 1003-1012, Vol. 25, No. 3
0270-7306/05/$08.00+0 doi:10.1128/MCB.25.3.1003-1012.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Department of Molecular Immunology, Institute of Development, Aging and Cancer, Tohoku University, Sendai,1 Hematology and Clinical Immunology, Nishi-Kobe Medical Center, Kobe, Japan,2 Department of Physiology, Jefferson Medical College, Philadelphia, Pennsylvania,3 Hematology Division, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts4
Received 6 May 2004/ Returned for modification 2 July 2004/ Accepted 26 October 2004
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In humans, both Runx1 and PEBP2ß are frequently targeted in leukemia-associated chromosomal abnormalities such as the t(8; 21) and inv translocations (16), which generate chimeric transcription factors that interfere with or abolish the transcriptional activity of endogenous PEBP2/CBF. For example, the inv (16)-derived PEBP2ß-SMMHC protein consists of an amino-terminal fusion of the PEBP2ß heterodimerization domain to the carboxy-terminal coiled-coil region of the smooth muscle myosin heavy chain.
In addition, while PEBP2/CBF was originally characterized as a transcriptional activator, recent studies have demonstrated that it can also function as a repressor, depending on the enhancer or promoter sequences it binds to and on the cofactors it interacts with. An interaction with p300/CBP or mSin3A converts Runx1 into an activator or a repressor, respectively (16, 19). Other factors such as YAP, Ear-2, ALY, Ets-1, MOZ, and Groucho/TLE also interact with Runx1 and modulate its activity (2, 5, 10, 13, 15, 17, 18, 37, 38). On the other hand, no such cofactors or modulators have been reported for PEBP2ß.
Although the structure and functions of the PEBP2/CBF transcription factor have been extensively studied, little is known about how its activity is influenced by the subcellular localization of its constituent subunits. The Runx1 protein possesses nuclear localization signals and is found exclusively in the nucleus, whereas PEBP2ß is located in the cytoplasm in most cells and tissues examined thus far (14, 32). The ability of Runx1 to bring PEBP2ß into the nucleus has been demonstrated (1, 31). On the other hand, the mechanism that localizes PEBP2ß to the cytoplasm is not known. We previously reported that cytoplasmic PEBP2ß has a weak affinity for a cytoskeletal structure, namely, F-actin on stress fibers (32). We also observed that PEBP2ß is located on or near the Z-line of muscle fibers, where many actin-associated proteins are abundant (7). Moreover, we found that the leukemogenic chimeric protein PEBP2ß-SMMHC disorganizes cytoplasmic stress fibers and that the PEBP2ß portion of this protein is necessary for interference (33). Based on these observations, we proposed that PEBP2ß interacts with actin-associated proteins and that this interaction determines the cytoplasmic localization of PEBP2ß (32, 33).
In the present study, we show that filamin A binds PEBP2ß and retains it in the cytoplasm, thereby preventing it from acting as a partner for the Runx1 transcription factor. When filamin A is absent, PEBP2ß moves into the nucleus and enhances Runx1-dependent transcription.
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Plasmid construction.
A c-Myc or hemagglutinin (HA) tag was fused to the amino or carboxy terminus of filamin A-C, PEBP2ß, or Runx1, as indicated in the text, by a PCR-based method. Carboxy-terminal deletion mutants of PEBP2ß were constructed by PCRs using the common sense primer 5'-CGGAATTCACCATGCCGCGCGTCGTCCCGG-3' and the following antisense primers: 5'-GGAATTCCTACTGGAGAGACAGATTGGTTC-3' for ß
C67, 5'-GGAATTCCTACTTGCCTGCTTCTCTCTC-3' for ß
C94, and 5'-GGAATTCCTACTGGGCTCGCTCCTCATC-3' for ß
C133.
For preparation of an internal deletion mutant, ß
68-93, the following primers were used in appropriate combinations for two successive rounds of PCR: 5'-AAGGTATACTTGAAGGCTCCCATG-3', 5'-CCAATCTGTCTCTCCAGAAGGTATACT-3', and 5'-CAAGAAGACAGCAAGACCCTAGGAATTCCG-3'. All cDNAs were subcloned into the mammalian expression vector pCAGGS-neo.
Cell culture. HeLa cells were cultured in Dulbecco's modified Eagle's medium (Life Technologies, Inc.) supplemented with 10% (vol/vol) fetal bovine serum. M2 and A7 cells were cultured in minimal essential medium (Life Technologies, Inc.) supplemented with 8% (vol/vol) newborn calf serum and 2% (vol/vol) fetal bovine serum (8). G418 (Sigma) was added to A7 cells at 0.3 mg/ml.
siRNA-mediated repression of filamin A. Five RNA oligonucleotides (iGENE) were synthesized by use of the following sense and antisense oligonucleotides: for filaminA-1499, 5'-CAGCUGACUUCAAGGUGUACACAAA-3' and 5'-UUUGUGUACACCUUGAAGUCAGCUG-3'; for filaminA-4566, 5'-AGUACUGUAUGGAGAUGAAGAGGUA-3' and 5'-UACCUCUUCAUCUCCAUACAGUACU-3'; for filaminA-5792, 5'-ACUACAGCAUUCUAGUCAAGUACAA-3' and 5'-UUGUACUUGACUAGAAUGCUGUAGU-3'; for filaminA-6911, 5'-ACUACGAAGUCUCAGUCAAGUUCAA-3' and 5'-UUGAACUUGACUGAGACUUCGUAGU-3'; for filaminA-7140, 5'-CACAGAAAUUGACCAAGAUAAGUAU-3' and 5'-AUACUUAUCUUGGUCAAUUUCUGUG-3'; and for the luciferase control, 5'-ACAUCACGUACGCGGAAUACUUCGA-3' and 5'-UCGAAGUAUUCCGCGUACGUGAUGU-3'. Small interfering RNAs (siRNAs) were introduced into HeLa cells by the use of Lipofectamine 2000 (Life Technologies, Inc.). The cells were processed for immunological detection 72 h after transfection.
Immunoprecipitation and immunoblot analysis. Expression vectors harboring Myc-tagged filamin A-C and HA-tagged PEBP2ß were cotransfected into HeLa cells by use of the Effectene reagent (Qiagen). Twenty-four hours after transfection, the cells were lysed with a buffer consisting of 50 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1% (vol/vol) Nonidet P-40, and a mixture of protease inhibitors (Complete; Roche Molecular Biochemicals). If the lysate was to be incubated with an anti-human filamin A monoclonal antibody (Chemicon), the cells were lysed with a buffer consisting of 25 mM HEPES (pH 7.5), 150 mM NaCl, 5 mM EDTA, 1% (vol/vol) Triton X-100, 10% (vol/vol) glycerol, 2 mM dithiothreitol, and a mixture of protease inhibitors. The cell lysates were incubated with the anti-c-Myc 9E10 antibody (Sigma), the anti-HA 3F10 antibody (Roche Molecular Biochemicals), or an anti-filamin A antibody, and the immunoprecipitates were adsorbed to protein G-Sepharose beads. The beads were washed five times with a buffer consisting of 50 mM Tris-HCl (pH 7.5), 200 mM NaCl, 1 mM EDTA, 1% (vol/vol) Nonidet P-40, and a mixture of protease inhibitors or, in the case of anti-filamin A precipitates, with a buffer consisting of 25 mM HEPES (pH 7.5), 150 mM NaCl, 5 mM EDTA, 1% (vol/vol) Triton X-100, 10% (vol/vol) glycerol, 2 mM dithiothreitol, and a mixture of protease inhibitors. Proteins were eluted by boiling the beads in sodium dodecyl sulfate (SDS) sample buffer, electrophoresed in an SDS-polyacrylamide gel, and transferred to a polyvinylidene difluoride membrane. Immunodetection of membrane-bound proteins was performed with the anti-HA 3F10, anti-c-Myc 9E10, or anti-PEBP2ß antibody (6), and products were visualized by use of the ECL Plus reagent (Amersham Pharmacia Biotech).
Cells subjected to siRNA analysis were lysed in a urea-Triton buffer, and immunoblot analyses were performed as previously described (7). The antibodies used were an anti-human filamin A antibody, a murine anti-ß-actin monoclonal antibody (Sigma), and a peroxidase-conjugated goat antibody to mouse immunoglobulin G (IgG) (Cappel Products).
Immunofluorescence analysis. Cells grown on coverslips were transfected with expression plasmids. Twenty-four hours later, the cells were fixed with 2% (wt/vol) paraformaldehyde, permeabilized with 0.1% (vol/vol) Triton X-100, and blocked with 1% (wt/vol) bovine serum albumin in phosphate-buffered saline. Signals were detected by an indirect immunofluorescence technique using anti-HA 3F10 as a primary antibody and Cy3-conjugated goat anti-rat IgG (Chemicon) as a secondary antibody or using anti-c-Myc 9E10 or an anti-human filamin A antibody as a primary antibody and Alexa fluor 488-goat anti-mouse IgG (Molecular Probes) as a secondary antibody. Cells were viewed with a confocal laser scanning microscope (LSM410 or LSM 5 PASCAL; Zeiss).
Reporter gene assay. Runx1 and PEBP2ß expression plasmids were cotransfected with the reporter plasmid pM-CSF-R-luc (39) by use of the Effectene reagent. pRSV-ß-GAL was transfected together with the reporter plasmid as an internal control, and its activity was used to normalize transfection efficiencies. Twenty-four hours after transfection, the cells were lysed in a lysis buffer (Promega), and the luciferase activities in lysates were measured by use of a luciferase assay system (Promega) and a Luminescencer-JNR AB-2100 instrument (Bio-Instrument). ß-Galactosidase activity was assayed by the use of chlorophenol red-ß-D-galactopyranoside (Roche Molecular Biochemicals) as a substrate. Each assay was performed at least three times. In each case, a siRNA for filamin A or a filaminA cDNA was introduced into HeLa or M2 cells, respectively. The cells were incubated for 24 h and then transfected with the expression plasmids for Runx1 and PEBP2ß together with the pM-CSF-R-luc reporter and the pRL-TK vector (Promega) as an internal control.
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FIG. 1. Interaction of PEBP2ß with filamin A. (A) Schematic diagram of structure of filamin A. The actin binding and homodimerization domains are located at the extreme amino- and carboxy-terminal ends, respectively. The repetitive domains are numbered. H represents a hinge region. A fragment of filamin A obtained in the yeast two-hybrid screening assay contained the PEBP2ß-interacting region and is termed filamin A-C. (B) HeLa cells were transfected with the indicated combinations of expression plasmids, and cell lysates were immunoprecipitated (IP) with an anti-Myc antibody. Precipitates were resolved by SDS-polyacrylamide gel electrophoresis and subjected to immunoblot (IB) analysis with the indicated antibodies. An aliquot of lysate was directly immunoblotted without immunoprecipitation to evaluate the level of protein expression. (C) Lysates of untransfected HeLa cells were immunoprecipitated (IP) with or without an anti-filamin A antibody. Precipitates were resolved by SDS-polyacrylamide gel electrophoresis and subjected to immunoblot (IB) analysis with the indicated antibodies. An aliquot of lysate was directly immunoblotted without immunoprecipitation to evaluate the level of protein expression (input).
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The central region of PEBP2ß is necessary for interaction with filamin A-C and for cytoplasmic localization.
To determine which region of PEBP2ß is responsible for its interaction with filamin A, we generated a series of carboxy-terminal deletion mutants. Figure 2A illustrates the relationship between each deletion derivative and the known substructures of PEBP2ß. The 141-amino-acid (aa) amino-terminal region of PEBP2ß is composed of four
helices, seven ß strands, and six loop structures. Since three isoforms of the PEBP2ß protein share the 133 amino-terminal amino acids, we constructed a derivative lacking the carboxy-terminal region (ß
C133) by truncating the protein at residue 134. The ß
C94 derivative lacked the ß5-L5 region, one of the Runt-interacting domains. The ß
C67 construct possessed only the 67 amino-terminal amino acids, and the ß
68-93 construct retained all of the Runt-interacting domains (ß1-L1, L2-ß3,
1, ß3, and ß5-L5) but lacked the L3-ß4-L4 region.
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FIG. 2. Mapping of the filamin A-interacting domain of PEBP2ß by yeast two-hybrid analysis. (A) Schematic diagram of domain structures found in the PEBP2ß protein and description of carboxy-terminal deletion mutants of PEBP2ß. , ß, and L represent helixes, ß strands, and loops, respectively. The thick lines at the top indicate areas I and II of the Runt-interacting region (30). (B) PEBP2ß and its deletion mutants were tested for the ability to interact with filamin A-C. Yeast cells were transformed with the indicated combinations of plasmids and grown on nonselective (Trp, Leu) and selective (Trp, Leu, His, 1 mM 3-amino-1,2,4-triazole) media. Lamin/large T antigen and Runx1/PEBP2ß served as negative and positive controls, respectively.
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C133 and ß
C94 derivatives, as well as full-length PEBP2ß, interacted with filamin A-C (Fig. 2B). We could not, however, assess the binding ability of the ß
C67 construct, since cells containing this construct alone were able to grow on selection medium. Notably, the internal deletion construct, ß
68-93, did not interact with filamin A-C. Thus, the region of aa 68 to 93 of PEBP2ß is necessary for its interaction with filamin A.
We next examined the effect of carboxy-terminal deletions on the subcellular localization of PEBP2ß. Each plasmid was transfected into HeLa cells, and the expression of transduced proteins as well as of endogenous filamin A was monitored by double immunofluorescence staining (Fig. 3). While full-length PEBP2ß and the ß
C133 and ß
C94 proteins were all located in the cytoplasm, the ß
C67 and ß
68-93 proteins were both found in the nucleus. Thus, the region of aa 68 to 93 is necessary for the cytoplasmic localization of PEBP2ß, since constructs that lack this region move into the nucleus.
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FIG. 3. Subcellular localization of PEBP2ß protein derivatives. Each PEBP2ß deletion mutant and full-length PEBP2ß were transfected into HeLa cells, and cells were processed for double immunofluorescence staining. Red and green fluorescence represent PEBP2ß and filamin A, respectively. Merged images are also presented.
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C133, and ß
C94 proteins were all located in the cytoplasm, the ß
C67 and ß
68-93 proteins were both found in the nucleus. On the other hand, in filamin A-deficient M2 cells, the full-length PEBP2ß, as well as all carboxy-terminal deletion mutants, was located in the nucleus (data not shown).
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FIG. 4. Subcellular localization of PEBP2ß protein in filamin A-deficient M2 cells. M2 and A7 cells were transfected with full-length PEBP2ß, fixed, and processed for double immunofluorescence staining as described in the legend to Fig. 3.
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FIG. 5. Effect of filamin A repression on subcellular localization of PEBP2ß protein. (A) Repression of filamin A expression by the siRNA method. HeLa cells were transfected with a siRNA targeted to filamin A or luciferase. The protein level in these cells was measured by immunoblot analysis. The top panel represents filamin A, and the bottom panel shows ß-actin. (B) Cells were treated with a siRNA as indicated, transfected with PEBP2ß cDNA, fixed, and processed for double immunofluorescence staining as described in the legend to Fig. 3. Merged images of two-color fluorescence were captured by differential interference contrast microscopy.
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Runx1 colocalizes with PEBP2ß in the nuclei of filamin A-deficient cells. We next examined whether the reported activity of Runx1 to bring PEBP2ß into the nucleus is affected by the presence of filamin A. Plasmids expressing PEBP2ß and Runx1 were cotransfected into the M2 and A7 cell lines, and the transduced proteins were detected by double immunofluorescence (Fig. 6A). Runx1 colocalized with PEBP2ß in the nuclei of filamin A-deficient M2 cells. In addition, PEBP2ß was coimmunoprecipitated with Runx1 from cotransfected M2 cell lysates (data not shown). In contrast, although Runx1 was found in the nuclei of filamin A-expressing A7 cells, PEBP2ß was found in the cytoplasm. These data suggest that the presence of filamin A prevents Runx1 from translocating PEBP2ß into the nucleus. On the other hand, filamin A did not have an effect on the subcellular localization of Runx1, which was localized to the nuclei of both M2 and A7 cells.
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FIG. 6. Subcellular distribution of PEBP2ß and Runx1 proteins in filamin A-deficient M2 cells and filamin A-expressing A7 cells. (A) M2 and A7 cells were cotransfected with Runx1 and PEBP2ß expression plasmids, fixed, and processed for double immunofluorescence. Red and green fluorescence represent PEBP2ß and Runx1, respectively. Merged images of two-color fluorescence are also presented. (B) A7 and M2 cells were transfected with the indicated combinations of Runx1 and PEBP2ß expression plasmids. The protein level of Runx1 in these cells was measured by immunoblot (IB) analysis with an anti-Myc antibody. The bands indicated by the arrow represent Runx1, whereas those indicated by the asterisk represent nonspecific reactions.
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The transcriptional activity of PEBP2/CBF is enhanced in filamin A-deficient cells. Filamin A may affect the extent of PEBP2/CBF transcriptional activity by controlling the subcellular localization of PEBP2ß. In order to assess this idea, we transfected M2 and A7 cells with an M-CSF-R-luc reporter, which allowed the contribution of PEBP2ß to the transcriptional activity of the PEBP2/CBF heterodimer to be measured (39). As seen in Fig. 7A, the transfection of PEBP2ß in addition to Runx1 caused a sixfold increase in luciferase activity in M2 cells compared to that in cells transfected solely with Runx1. On the other hand, in A7 cells, the cotransfection of PEBP2ß and Runx1 caused a 1.6-fold increase in luciferase activity compared to cells transfected only with Runx1.
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FIG. 7. PEBP2/CBF transcription activity in filamin A-deficient M2 cells and filamin A-expressing A7 cells. (A) M2 and A7 cells were cotransfected with an M-CSF-R-luc reporter construct and Runx1 and/or PEBP2ß expression plasmids as indicated. Luciferase activities in cell lysates are presented as averages ± standard deviations. (B) HeLa cells pretreated with a filamin A siRNA and untreated HeLa cells were cotransfected with an M-CSF-R-luc reporter construct and Runx1 and/or PEBP2ß expression plasmids as indicated. (C) M2 cells which were pretransfected with filaminA cDNA were cotransfected with an M-CSF-R-luc reporter construct and Runx1 and/or PEBP2ß expression plasmids as indicated.
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Thus, the transcriptional activity of PEBP2/CBF is enhanced by an increase in the level of PEBP2ß, but only in the absence of filamin A. Conversely, the presence of filamin A appears to decrease the transcriptional activity of PEBP2/CBF, probably by retaining PEBP2ß in the cytoplasm. (Note that the ß
68-93 protein did not induce transcriptional activation in a reporter assay [data not shown]. This was probably because its three-dimensional structure was unfavorably altered due to the deletion.)
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By analyzing deletion mutants, we identified a region within the PEBP2ß molecule that is important for its interaction with filamin A and for cytoplasmic localization. This region spans aa 68 through 93 and consists of loop-ß strand-loop (L3-ß4-L4) structures, but only 2 aa comprise the ß4 strand. Therefore, this region as a whole does not appear to adopt a solid two-dimensional structure but is instead flexible. Furthermore, it contains a hydrophobic tryptophan residue (aa 73) embedded in a cluster of hydrophilic amino acid residues (30). These characteristics likely confer upon the region a tendency to interact with other molecules. In addition, an inspection of the three-dimensional structure of PEBP2ß showed that the region responsible for interacting with filamin A and the Runx1-interacting region are situated on opposite sides of the molecule. The Runx1-interacting region is composed of an alpha helix and four ß strands and probably adopts a rigid structure (30). Thus, based on the above observations, we propose a new model which holds that the PEBP2ß protein consists of two structurally and functionally distinct domains. The first is a regulatory domain that has a loose structure and which perhaps interacts with various molecules. The binding of this domain by filamin A, for example, retains PEBP2ß in the cytoplasm, thereby preventing it from being recruited as a component of a transcription factor complex. The second domain is an executive domain that has a rigid structure and which perhaps interacts only with the Runx1 protein. When it is bound to Runx1, PEBP2ß can function as a transcription factor in the nucleus.
It is not clear how PEBP2ß moves into the nucleus in the absence of filamin A. Previously, the Runx1 protein was thought to bring PEBP2ß into the nucleus (1, 31). However, Runx1 protein expression was not detected in M2 cells by immunoblot analysis (Yoshida and Watanabe, unpublished observation), and PEBP2ß was detected in the nuclei of M2 cells that were not transfected with Runx1. An unidentified mechanism appears to be involved in the nuclear localization of PEBP2ß.
Runx1 and PEBP2ß are known to be indispensable for the development of hematopoietic stem cells, and a precise dose of each of the Runx1 and PEBP2ß proteins appears to be necessary for the proper functioning of PEBP2/CBF during this process (6, 20, 23). For example, a haploinsufficiency of Runx1 can impair the temporally and spatially regulated generation of hematopoietic stem cells in mouse embryos (6). Hematopoietic stem cells develop from hemangioblasts, a specific subset of endothelial cells. Notably, hemangioblasts, which undergo transformation from flat endothelial cells to round hematopoietic cells, are considered to accompany alterations of cytoskeletal structures, including the actin and perhaps filamin A molecules. One can imagine that the mechanism described in the present study may tune the activity of PEBP2/CBF at the site of hematopoietic stem cell generation. Efforts toward understanding this mechanism are under way.
Filamin A regulates the subcellular localization of Smad2 and of the androgen receptor (26, 27), two transcription factors that are usually found in the cytoplasm. The treatment of cells with transforming growth factor beta leads to the phosphorylation of Smad2 and to the subsequent translocation of the phosphorylated form into the nucleus. Interestingly, Smad2 is neither phosphorylated nor translocated into the nucleus after transforming growth factor beta stimulation in cells lacking filamin A. Similarly, the androgen receptor, which moves into the nucleus when bound to its ligand, remains in the cytoplasm of cells that do not express filamin A. Therefore, filamin A probably serves as a site at which a kinase and/or other ligand can also bind, and in the absence of filamin A, target molecules are not appropriately modified and thus are not translocated into the nucleus. On the other hand, PEBP2ß is translocated into the nuclei of cells lacking filamin A, which enhances the transcriptional activity of PEBP2/CBF. A signal that can dissociate the interaction of PEBP2ß and filamin A is not known at present. Thus, the mechanisms by which filamin A regulates the nuclear translocation and transcriptional activity of PEBP2ß and of Smad2 and the androgen receptor appear to differ. Our present study has thus broadened the molecular scope of the interplay between cytoskeletal filamin A and transcription factors.
We thank M. Shiina and K. Ogata for their valuable comments on the structural aspects of PEBP2ß. We also thank D. Tenen for providing the p-M-CSF-R-luc reporter construct. We are grateful to M. Kuji for secretarial assistance.
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