Laboratory of Molecular Oncology and Cell Cycle Regulation, Departments of Medicine, Genetics, and Pharmacology, and Abramson Cancer Center, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania
Received 14 July 2004/ Returned for modification 9 September 2004/ Accepted 3 January 2005
| ABSTRACT |
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| INTRODUCTION |
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Cyclins and CDKs bind p21 through the consensus site CRRL (p21 amino acids [aa] 18 to 21) at the N-terminal end, and this motif is required for inhibition of cell cycle progression (11, 12, 23, 46). Interestingly, there is a second, KRRL motif (aa 154 to 157) for CDK-cyclin binding near the C-terminal end of p21, which is absent in the other members of the CDK inhibitor family (11, 23). In addition to cyclin-CDK binding, p21 through aa 144 to 151 also associates with proliferating cell nuclear antigen (PCNA). PCNA stimulates the processivity of DNA polymerase
and
, which are required for high-fidelity DNA replication and excision repair (11, 62, 69). PCNA forms quaternary complexes in normal fibroblasts but appears to act independently of p21 in cancerous cells (22, 75, 76, 78). Furthermore, the full-length p21 protein or a peptide consisting of aa 144 to 151 of p21 can inhibit PCNA function in DNA synthesis in vitro (11, 27, 70).
The ability of p21 to regulate the cell cycle is dependent on its subcellular localization. Akt has been reported to phosphorylate p21 at T145 in HER-2/neu-overexpressing cells and to retain p21 in the cytoplasm (82). Cytoplasmic retention of p21 resulted in loss of cell cycle inhibition and gain of an apoptosis inhibitory activity (17, 82). It has also been reported that upon differentiation of U937 cells into monocytes, p21 translocates from the nucleus to the cytoplasm and rescues cell death (4). Thus, the cell cycle inhibitory activity of p21 correlates with its nuclear localization. Moreover, expression of a p21 mutant that lacks a nuclear localization sequence did not induce cell cycle arrest or monocytic differentiation (4). The apoptosis resistance phenotype of cytoplasmic p21 has been associated with inhibition of apoptosis signal-regulating kinase 1 function (4). Following exposure to genotoxic agents, p21 enters the nucleus, and in addition to promoting cell cycle arrest to prevent S-phase progression, p21 also colocalizes with PCNA to promote nucleotide excision repair (43, 45).
Immunoprecipitation analysis has shown that p21 interacts with cyclin D throughout the cell cycle, whereas interaction between p21 and cyclin A or cyclin B occurs in the later part of the cell cycle (44). It has also been reported for nontransformed fibroblast cells that p21 transiently colocalizes with cyclin A or cyclin B1 in the nucleus at G2/M (15). p21 associates with a number of cyclin-CDK complexes, including the G1/S-phase kinases. Primary embryonic fibroblasts cells from p21/ mice have a significantly reduced number of premitotic cells with nuclear cyclin B1, suggesting that p21 may promote a transient pause late in G2 where it may play a role in late cell cycle checkpoint controls (15). p21 or 14-3-3
null cells were also found to be unable to maintain G2/M arrest and die when exposed to DNA-damaging agents (5, 6, 9). Subsequently, studies on 14-3-3
and p21 double-knockout cells established a complementary role of both proteins in G2/M arrest following DNA damage (9). The G2/M arrest following p21 overexpression apparently occurs even though p21 binds poorly to cyclin B1-Cdc2 (31).
In normal cell cycle progression, phosphorylation of Cdc2 by CDK activated kinase and dephosphorylation by Cdc25C on two conserved residues, Thr 14 and Tyr 15, activate the cyclin B1-Cdc2 kinase and trigger the cells to enter into M phase (48-50). Similarly, inactivation of both cyclin B-Cdc2 and cyclin A-CDK2 is required for completion of mitosis. Several reports demonstrated that p21 binds with cyclin A-CDK2 and cyclin B-Cdc2 (11, 31, 49, 76). However, whether p21 binding with these two kinases during normal cell cycle progression might affect the cell cycle during G2/M remains unclear.
Some previous studies have investigated the phosphorylation of p21 (33, 79). An in vitro kinase assay was performed with 35S-labeled p21 in unsynchronized sf9 cells (79). The cell lysates were incubated with preformed cyclin A-CDK2 kinase complexes followed by immunoprecipitation with either anti-cyclin A or anti-p21 antibody. Using autoradiography of the immunoprecipitated proteins, it was shown that p21 has a high-molecular-mass band along with the 21-kDa band. Similarly, two different mobility forms of the p21 protein were noted by immunoblotting when mouse embryonic fibroblasts (MEFs) arrested at G2/M and immunoprecipitated with cyclin A, cyclin B1, or p21 antibodies (15). An in vitro kinase experiment with either full-length p21 protein, human p21 expressed in sf9 cells, or a p21 C-terminal peptide showed that different amino acids within p21 can be phosphorylated by PKA and PKC, and this may modulate PCNA binding (62). p21 contains many consensus sites that may serve as substrates for different kinases, including CDK2, ATM/ATR, Akt, PKA, PKC, GSK3, CKI and CKII. However, there is no clear evidence of which sites can be phosphorylated in vivo and which kinase(s) are involved in this process, particularly at G2/M.
In the present study, we have established that p21 is hyperphosphorylated during G2/M, that CDK2 is likely the major kinase which hyperphosphorylates p21 on threonine 57, and that hyperphosphorylated p21 plays a positive role in promoting the G2-prophase transition. p21 enters the nucleus during S phase, becomes hyperphosphorylated by CDK2 at the S/G2 boundary, and subsequently interacts specifically with serine 126 of cyclin B1 prior to activation of Cdc2 kinase by Cdc25C. Threonine 57, when phosphorylated in p21, appears to be the critical residue for interaction with cyclin B1. There also appears to be a preferential association between cyclin B1 with G2/M-hyperphosphorylated p21 compared to hypophosphorylated p21, whereas cyclin A appears to associate similarly with either hyperphosphorylated or hypophosphorylated p21. Association between p21 and cyclin B1-Cdc2 appears to promote cyclin B1-Cdc2 kinase activity at G2/M. In support of the role of p21 in positively regulating normal G2/M progression, we show that p21-null cells have significantly delayed activation of cyclin B1-Cdc2 kinase activity compared to cells with wild-type p21. Introduction of wild-type but not threonine 57-mutated p21 restored efficient Cdc2 kinase activation. Although we show that either p21 or cyclin B1 interacts poorly with Y15-phosphorylated Cdc2, they appear to interact well with Thr-161-phosphorylated Cdc2. Our working model is that p21 becomes phosphorylated prior to Cdc25C activation. The phosphorylated p21 binds to cyclin B1 at a time when Cdc2 is phosphorylated on Y15 and associates poorly with the complex. Subsequent dephosphorylation of Cdc2 by Cdc25C promotes binding of Cdc2 to the p21-cyclin B1 complex, which can then become activated as a kinase. Our studies provide molecular insights into the events leading to the G2/M-specific hyperphosphorylation on p21 as well as a novel understanding of the role of p21 in control of Cdc2 activation during the early steps of G2/M progression.
| MATERIALS AND METHODS |
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In order to synchronize cells in quiescence, asynchronously growing cells were cultured in fetal bovine serum (FBS)-depleted (0%) medium for 32 h. For S-phase enrichment, cells were grown in FBS-depleted medium for 32 h followed by treatment with aphidicolin (2 µg/ml) for another 24 h. The cells were then released from aphidicolin block by washing with Hanks balanced salt solution and propagated for another 2 or 4 h in complete medium as previously described (38). To monitor aphidicolin release of cells into S phase and G2/M, they were grown for different time periods (see figures and legends) following aphidicolin release. Similarly, nocodazole (0.8 µg/ml, Sigma), vincristine (1.0 µg/ml; Sigma), colchicine (1.0 µg/ml, Sigma), colcimid (1.0 µg/ml, Sigma), or taxol (1.0 µg/ml, Sigma) was used to arrest cells at G2/M. When using nocodazole to block the cells, they were released by washing several times with Hanks balanced salt solution and medium and propagated with complete medium for different time points as described in legends to the figures.
For dual labeling with BrdU and propidium iodide, H460 cells were treated with nocodazole for different time points (see Fig. 3A). BrdU was added at 10 µM (final concentration) 30 min before harvesting. Using anti-BrdU and goat F(ab')2 anti-mouse immunoglobulin G (IgG) (H+L)-fluorescein isothiocyanate (FITC) (Becton-Dickinson), cells were stained and analyzed by fluorescence-activated cell sorting (FACS).
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For FACS analysis, cells were harvested by treatment with trypsin, washed in phosphate-buffered saline, and resuspended in 70% ethanol for storage at 80°C until further analysis. Propidium iodide (50 µg/ml; Sigma)-stained cells were analyzed using an Epics Elite sorter (Beckman-Coulter).
DNA damage, kinase inhibition, and peptide synthesis. All tissue culture media and serum were purchased from GIBCO BRL. Both asynchronous and synchronized cells were treated either with or without UV light at 5 J/m2 and mitomycin C (MMC) (20 µg/ml) (Sigma) for the last 4 h (after 18 h of nocodazole treatment) before harvesting. Exponentially growing H460 cells were treated with nocodazole plus either butyrolactone (Affiniti Research Products Ltd.), caffeine (Sigma), wortmannin (Sigma), GSK3 inhibitor (Calbiochem), UCN-01 (a gift from Robert J. Schultz, National Institutes of Health), or a 24-amino-acid p21 peptide including human immunodeficiency virus (HIV) Tat and the C-terminal nuclear localization sequence (synthesized in the Protein Chemistry Laboratory, University of Pennsylvania Core; supported by grants DK-19525 and CA16520). The amino acid sequence of the peptide used included 11 amino acids of HIV Tat and 13 amino acids of the nuclear localization signal (NLS)/PCNA binding region of p21 (in bold), respectively: Y-G-R-K-K-R-R-Q-R-R-R-G-R-K-R-R-Q-T-S-M-T-D-F-Y. A 24-amino-acid region of the HIV Tat-Tat fusion peptide was used as a control.
Antibodies. The following primary antibodies were used: WAF1 (Ab-1) mouse monoclonal from Oncogene Research Products, actin (C-2) mouse monoclonal, cyclin B1 (GNS1) mouse monoclonal, PCNA (PC-10) mouse monoclonal, Cdc2 p34 (clone17) mouse monoclonal, Cdc25C (C-20) rabbit polyclonal, CDK2 (M2) goat polyclonal, p27 (F-8) mouse monoclonal, cyclin A mouse monoclonal, cyclin D1 mouse monoclonal and cyclin D1 rabbit polyclonal from Santa Cruz Biotechnology, and phospho-Cdc2 (Tyr15) rabbit polyclonal (Cell Signaling Technology). Histone H1 antibody was purchased from Sigma.
Whole-cell extract preparation. Cells were washed twice with PBS, scraped, and resuspended in 250 µl of lysis buffer. Cell lysis buffer contained 50 mM Tris (pH-8), 120 mM NaCl, 0.5% Nonidet P-40, 50 mM NaF, 1 mM sodium orthovanadate, 100 µg of polymethylsulfonyl fluoride/ml, 20 µg of aprotinin/ml, and 10 µg of leupeptin/ml. The lysates were kept on ice for 1 h, followed by centrifugation at 14,000 rpm (Beckman Coulter) for 10 min to remove the insoluble materials, and kept at 80°C until used.
Phosphatase treatment. H460, HCT116, and PA1 cell extracts (prepared under nondenaturing conditions) were diluted with phosphatase buffer and 0.2 U of Lambda protein phosphatase (New England Biolabs)/ml and then incubated at 30°C for 1 h. Samples were separated by sodium dodecyl sulfate (SDS)-15% polyacrylamide gel electrophoresis (PAGE) and immunoblotted for expression of hyper- and hypophosphorylated p21 proteins.
Orthophosphate labeling and one- or two-dimensional (2D) gel electrophoresis. H460 cells were washed with phosphate-free medium (Gibco/BRL) and treated with nocodazole (for 18 h) in T75 flasks, while labeling was done with 2 mCi of [32P]orthophosphate/flask in 5 ml of Dulbecco's modified Eagle's medium containing 10% FBS. Cells were collected and placed in lysis buffer (see "Whole-cell extract preparation") and immunoprecipitated with p21 antibodies to deplete the p21 protein. The hyper- and hypophosphorylated p21 proteins were separated either by one-dimensional gel electrophoresis or according to their isoelectric points on a 2D Ettan gel electrophoresis apparatus (Amersham).
Expression of wild-type CDK2 and dominant-negative CDK2 (DN-CDK2) in U2OS cells. U20S cells were transfected with either wild-type CDK2, DN-CDK2 (gifts from Greg Enders, University of Pennsylvania), or empty vector for 24 h and then treated with nocodazole to enrich the cells in prometaphase stage for 18 h. Cells were collected, placed in lysis buffer (see "Whole-cell extract preparation"), and electrophoresed using a 15% polyacrylamide gel to observe the phosphorylation status of p21.
Expression of siRNA directed against CDK2. The CDK2 short interfering RNA (siRNA) vector was constructed by inserting the oligonucleotide sequence TCCGCCTGGACACTGAGAC (complementary to the CDK2 mRNA sequence from nucleotides 104 to 122 into the plasmid pSuperRetro (Oligoengine). The construct was confirmed by DNA sequencing. U2OS cells were transfected with either pSuperRetro vector or pSuperRetro CDK2 RNAi for 24 h and then treated with nocodazole for another 18 h. Asynchronous cells were kept for 48 h after transfection. Cells were collected for flow cytometric analysis or were analyzed using 15% PAGE to observe the phosphorylation status of p21 and CDK2 expression.
Annexin V-enhanced green fluorescent protein assays. Asynchronous cells treated with nocodazole, the 24-amino-acid p21 peptide, or both were stained with annexin V-enhanced green fluorescent protein (Bio Vision Research Products, Palo Alto, Calif.) for analysis of phosphoserine inversion as recommended by the manufacturer.
Immunofluorescence. Exponentially growing cells were plated on four-chamber glass slides (Nalge Nunc International, Naperville, Ill.) according to instructions provided by the manufacturer and synchronized following the cell synchronization procedure mentioned above. H460 cells were also treated with p21 peptide along with nocodazole or with p21 peptide alone for 18 h at 37°C. The cells were washed with PBS three times and fixed in Histochoice for 5 min. Cells were subjected to permeabilization with 0.5% Triton X-100 for 5 min and blocked with goat serum (GIBCO BRL) for 1 h at room temperature. All antibodies were diluted with goat serum. p21 primary monoclonal antibody (1:100) was added to the slides, which were kept at room temperature for 2 h, followed by three additional washes in PBS. Goat anti mouse-IgG conjugated with biotin (1:200) and avidin conjugated with FITC (1:200) were added to the slides, respectively, and incubated at room temperature for 1 h each. Finally, slides were washed three times in PBS and mounted with Vectashield (Vector Laboratories, Inc., Burlingame, Calif.). The slides were observed and photographed with a Nikon (Diaphot) microscope using x20 and x40 lenses.
To observe colocalization of p21 with other nuclear proteins, H460 cells were fixed in Histochoice, followed by permeabilization with 0.5% Triton X-100 for 5 min. Colocalization of p21 (Ab-5, rabbit polyclonal; Oncogene Research) with cyclin A (mouse monoclonal; Santa Cruz Biotechnology), cyclin D1 (rabbit polyclonal; Santa Cruz Biotechnology), or phosphoserine 10 H3-histone (Sigma) was performed. Similarly, either mouse monoclonal or rabbit polyclonal antibodies of p21 (Oncogene Research) with the respective rabbit polyclonal or mouse monoclonal anti-cyclin B1 (Santa Cruz Biotechnology) antibodies were used for 2 h at room temperature. All the antibodies were diluted in PBS without Ca2+ or Mg2+. The FITC-conjugated Affinipure goat anti-rabbit IgG (H+L) and Rhodamine Red-TM-X-conjugated Affinipure goat anti-mouse IgG (H+L) secondary antibodies were used for 1 h, also following the manufacturer's instructions (Jackson Immuno Research Laboratories, Inc.).
Time kinetic study of nocodazole-arrested cells. Asynchronous cells were treated with nocodazole (0.8 µg/ml) and cultured for several hours to observe the initial time of p21 phosphorylation and entry of different cell lines into the mitotic phase. p21, Cdc2, CDK2 cyclin B1, PCNA, cyclin A, Cdc25C, and p27 were detected by Western blot analysis. Actin was used as a loading control. The cell cycle profile was analyzed to compare the pattern of G2/M cells for H460, DLD1, and HCT116 p21+/+ and p21/ cells. Samples from different time periods were collected for Western analysis, kinase assays, and FACS analysis to study the phosphorylation status, kinase activity, and cell cycle profiles, respectively. Similarly, 18-h nocodazole-arrested H460 cells were treated with cycloheximide (Sigma) at a 10-µg/ml concentration for different time periods to block new protein synthesis and determine the relative half-lives of hyperphosphorylated and hypophosphorylated p21 proteins.
DLD1 p21+/+ or p21/ cells were grown in chamber slides, followed by treatment with nocodazole for 18 h. Cells were released from nocodazole at different time points, and mitotic cells were counted following 4',6'-diamidino-2-phenylindole (DAPI) staining.
Immunoprecipitation and immunoblotting. One hundred micrograms of whole-cell extracts were loaded per lane on SDS-15% PAGE gels to observe the mobility shift of the p21 protein. Polyvinylidene difluoride membranes were probed with primary antibodies, including p21 diluted at 1:200 or others (Cdc2, CDK2, cyclin B1, p27, actin, etc.) diluted at 1:1,000, and kept at room temperature for 2 h. The secondary antibody was peroxidase-conjugated goat anti-mouse IgG (H+L; Pierce) diluted at 1:5,000 in 1% nonfat dry milk in Tris-buffered saline with Tween 20. Signals were developed using an ECL-plus kit (Amersham Biosciences).
For immunoprecipitations, precleared 0.5 to 1 mg of whole-cell lysates (resuspended in nondenaturing lysis buffer; see section on whole-cell extracts) were immunodepleted with antibody for 2 h. To this antibody complex, either protein A/G agarose or protein L agarose (Invitrogen, Inc.) beads were added for another hour and kept at 4°C in an end-to-end shaker. The beads were washed three times with lysis buffer without protease inhibitors. Finally, 2x Laemmli buffer was added to the beads, and the samples were boiled before analysis by use of SDS-PAGE.
In vitro kinase assay.
Precleared cell lysates, using 500 µg from nocodazole-treated H460, HCT116 p21+/+, or p21/ cells, were immunodepleted with saturating amounts (4 µg) of either cyclin B1 or CDK2 antibody. Mock samples were incubated with protein G agarose beads for 2 h at 4°C. Twenty-five microliters of protein G agarose beads were added to the tube with end-to-end mixing for another hour, followed by three washes with lysis buffer without protease inhibitors (see section on whole-cell extracts). In vitro kinase assays were performed as described previously (79) at 30°C for 1 h with histone H1 as a substrate and using the kinase buffer (50 mM Tris HCl [pH 8.0], 10 mM MgCl2, 2.5 mM MnCl2, ATP [25 µM], [
32p]ATP [10 µCi]). Similarly, adenovirus His-p21 was used to infect DLD1 p21/ asynchronous cells for 24 h, and His-p21 protein was purified by using nickel-nitrilotriacetic acid agarose column. In vitro kinase assays were performed with His-p21 as a substrate in the presence of [
32p]ATP (10 µCi), using the above-mentioned kinase buffer and nocodazole-treated G2/M-enriched DLD1 p21/ cell extract.
Mutagenesis studies. The plasmid constructs of cyclin B1 (wild type and four or double serine mutants of the NLS region) were a kind gift from Eisuke Nishida (Kyoto University, Kyoto, Japan) (68). However, we also generated the single serine mutants of cyclin B1 at S126A, S128A, S133A, and S147A, using the Quikchange site-directed mutagenesis kit (Stratagene). All constructs were sequenced to verify the authenticity of the sequences. The plasmids were transfected and immunodepleted with hemagglutinin (HA) antibody, and blots were developed with p21 monoclonal antibody to observe any specific interaction between cyclin B1 and p21. Similarly, HA constructs of p21 (wild-type and different CDK2 phosphorylation sites) were mutated (as described in the legend to Fig. 6). The plasmids were transfected using Lipofectamine 2000 (Invitrogen) for 24 h, followed by 18 h of nocodazole treatment. Cells were harvested with whole-cell extract lysis buffer, immunoprecipitated with HA antibody, and probed with cyclin B1 or p21 antibody. Wild-type or single or multiple mutants were made against the nuclear localization signal sequence of Flag-tagged p21 and transfected in U2OS cells. Immunofluorescence staining against the Flag epitope (Flag monoclonal antibody Cy3 conjugate; Sigma) was performed, and cells were analyzed for the localization of p21, using both asynchronous or nocodazole-treated cells.
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| RESULTS |
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-32P]ATP. The results showed high phosphorylation of His-p21 in G2/M-enriched cells (Fig. 1B-d) compared to the asynchronous cells, suggesting that p21 phosphorylation can occur in G2/M. In total, in addition to H460, PA1, and HCT116 cells, hyperphosphorylated p21 was found in nocodazole-treated G2/M-arrested U2OS, SW480, HeLa, and SAOS2 tumor cells and WI-38 normal human lung fibroblasts (Fig. 1; also data not shown).
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To determine the localization of the p21 protein with respect to different cell cycle stages and its phosphorylation, H460 lung cancer cells were synchronized in G1, S, and G2/M phase, and p21 protein was detected by immunofluorescence (Fig. 1E). p21 protein localized to the cytoplasm in FBS-depleted, G0-G1-arrested cells compared to asynchronous cells (Fig. 1E-b versus 1E-a). However, 4 h after release from aphidicolin, almost 90% of the cells were in S phase and showed nuclear staining (Fig. 1E-c; also data not shown). Similarly, in nocodazole-arrested cells (18 h), p21 localized to the chromatin material (Fig. 1E-d). To further confirm that p21 localizes to chromatin, colocalization of p21 and phosphoserine 10 H3-histone was performed by immunofluorescence with H460 cells treated with nocodazole for 18 h. Both p21 and phosphoserine 10 H3-histone were colocalized with the DAPI-positive chromatin materials in prophase and prometaphase cells (see Fig. S1 in the supplemental material). Thus, comparing localization of the p21 protein in S and G2/M phases with Western analysis (Fig. 1A and E), it is clear that p21 is not hyperphosphorylated during S phase, but it is already in the nucleus. In cells released from nocodazole, within 2 h, p21 retranslocates to the cytoplasm (data not shown). However, at this time point Western analysis showed loss of hyperphosphorylation of p21. These results led us to hypothesize that during cell cycle progression, p21 enters the nucleus during S phase, where it may become phosphorylated, possibly serve a regulatory function, and then exit the nucleus as cells transit towards the next G1 phase. Below, we further examine candidate kinases and possible functions of hyperphosphorylated p21 in G2/M.
G2/M hyperphosphorylated p21 protein is short-lived compared to hypophosphorylated p21. H460 cells arrested with nocodazole for 18 h were treated for different time periods with 10-µg/ml cycloheximide, an inhibitor of protein synthesis. After 6 h of cycloheximide exposure, the hyperphosphorylated p21 band disappeared while the hypophosphorylated band remained visible up to 8 h after cycloheximide treatment (Fig. 1F). This suggests that the hypophosphorylated form of p21 may have a longer half-life and may possibly be more stable than the hyperphosphorylated form. In cycloheximide-treated asynchronous cells, p21 has a half-life similar to that of the hypophosphorylated p21 in nocodazole-arrested cells (Fig. 1F). These results raise the interesting possibility that hyperphosphorylated p21 may be transiently expressed in cells during G2/M in order to perform one or more specific function(s). It is possible that by ubiquitination and subsequent degradation and/or dephosphorylation (as an alternative, not mutually exclusive explanation for reduced levels of hyperphosphorylated p21), levels of hyperphosphorylated p21 may be tightly controlled. Although it is formally possible that there may be interconversion between the hyper- and hypophosphorylated forms of p21, it is clear that in the absence of new protein synthesis the hyperphosphorylated p21 species is short-lived compared to the hypophosphorylated form of p21. In further support of this notion, we have observed prolonged expression of hyperphosphorylated p21 in cycloheximide-treated nocodazole-arrested cells treated with the proteasome inhibitor ALLN (unpublished observation).
CDK2 is likely the major kinase that phosphorylates p21 at G2/M. CDK2 or Cdc2 are candidate kinases that may mediate p21 phosphorylation, since these two kinases are expressed and active at the S and G2/M phases of the cell cycle (26, 35, 57, 61). Although a role for CDK2 in G2/M cell cycle regulation has been proposed for both human and Xenopus cells, little is known about the substrates that might mediate subsequent events. Moreover, these kinases do not require DNA damage for their activation during S and G2/M phases. To determine which kinase(s) is involved in p21 phosphorylation, we initially tested several kinase inhibitors, including butyrolactone, wortmannin, caffeine, UCN-01, and GSK3 inhibitors (Fig. 2; also data not shown). With examination of the amino acid sequence of p21 and consensus sites for phosphorylation by different kinases, it is clear that there is no site for Cdc2, but there are at least three sites for CDK2. Thus, it is unlikely that Cdc2 phosphorylates p21. With this in mind, asynchronous H460 cells were treated with either butyrolactone (a CDK inhibitor) plus nocodazole, butyrolactone alone, or nocodazole alone. Western analysis (Fig. 2A) revealed that even with very low concentrations of butyrolactone, the hyperphosphorylation of p21 was inhibited. In contrast, there was no change in the protein level with two doses of nocodazole plus butyrolactone tested in the asynchronous cells. Analysis of cell cycle distribution shows that 90% of the nocodazole-exposed cells treated with the lowest dose of butyrolactone (10 µM) were in G2/M, suggesting that loss of p21 hyperphosphorylation was not due to a change in cell cycle position (Fig. 2A). To confirm further that CDK2 is the main kinase that phosphorylates p21 at G2/M, CDK2 or DN-CDK2 was ectopically expressed in U20S cells, followed by nocodazole treatment (Fig. 2B). DN-CDK2 blocked the hyperphosphorylation of p21 after nocodazole treatment compared with the wild-type CDK2 (Fig. 2B). Ectopic expression of DN-CDK2 partially blocked cells from entering into G2/M phase (by about 7.2%) compared to results with CDK2 (Fig. 2B). However, the inhibition of p21 phosphorylation by DN-CDK2 cannot be attributed to prevention of cells from entering G2/M, because 74.3% of the cells were found in G2/M. In a similar manner, targeting of CDK2 by siRNA, which reduced CDK2 expression dramatically compared to that with the vector control, inhibited p21 phosphorylation in nocodazole-treated G2/M-arrested U2OS cells (Fig. 2C). These results further support the conclusion that CDK2 might be the principal kinase responsible for p21 phosphorylation in G2/M-arrested cells. Previously, cyclin A-CDK2 has been shown to phosphorylate p21 in vitro at two different amino acid residues (33, 37, 79). However, it is possible that other kinases may also be involved in the phosphorylation of p21 at G2/M in vivo.
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Wortmannin inhibits the PI-3 kinases and downstream targets like Akt, ATM, DNA-PK and mTOR kinase activities (60). However, wortmannin does not inhibit the ATR kinase. Since p21 phosphorylation was found to be sensitive to caffeine, it is possible that ATR and not the ATM kinase may be responsible. Also, p21 phosphorylation by Akt at residue T145 has been reported (82). Wortmannin had no effect on hyperphosphorylation of p21 in G2/M (data not shown). UCN-01, a PKC as well as a Chk1 kinase inhibitor (3, 39), also did not affect p21 phosphorylation (data not shown). These results suggested that neither ATM nor PI-3Ks/Akt, DNA-PK, PKC, or Chk1 was responsible for p21 phosphorylation at G2/M. However, it could not be ruled out that T145 phosphorylation of p21 at the end of the mitotic phase may lead to cytoplasmic migration. However, nocodazole-treated cell lysates did not show p21 when probed with Akt substrate-specific antibodies, suggesting that Akt might not phosphorylate p21 at G2/M (data not shown). Thus, by comparing the phosphorylation of p21 after exposure to various checkpoint-signaling inhibitors, it is clear that ATM, Chk1, Akt, or PKC is unlikely to be the kinase involved in G2/M-dependent phosphorylation of p21. However, ATR involvement cannot specifically be ruled out, although we found no report in the literature to suggest ATR kinase activation in nocodazole-treated cells.
A 24-amino-acid Tat-p21 fusion peptide encompassing the nuclear localization signal and the PCNA-binding region of p21 blocks p21 phosphorylation and results in cell death. Previously, small peptides have been used as powerful tools to probe regions of proteins mediating different biological activities and protein-protein interactions (27, 72, 73). Because nuclear translocation of p21 was found to precede its phosphorylation, we designed a short peptide to attempt to interfere with its nuclear translocation. We hypothesized that the region containing the NLS region of p21 (13 aa) as a Tat fusion (an additional 11 aa) may serve as an effective competitive inhibitor for p21 nuclear translocation and may possibly inhibit p21 hyperphosphorylation. We used two concentrations (50 and 100 µM) of the 24-amino-acid Tat-p21 fusion peptide with either nocodazole-treated or aphidicolin-released cells to examine effects on the subcellular localization of p21. Although at a 50 µM concentration of the Tat-p21 peptide there was a minimal effect on p21 hyperphosphorylation, we found that at 100 µM the synthetic Tat-p21 peptide completely blocked p21 hyperphosphorylation (Fig. 2E and F). UV exposure had no effect on either the hyperphosphorylation of p21 in the presence of nocodazole or the ability of the Tat-p21 fusion peptide to block this phosphorylation (Fig. 2E). If the cells were pretreated with the Tat-p21 fusion peptide, subsequent UV exposure prevented p21 translocation to the nucleus (data not shown).
To confirm that p21 must translocate to the nucleus in order to become hyperphosphorylated at G2/M, H460 cells were treated with Tat-p21 fusion peptide either alone or with nocodazole. By immunofluorescence, the Tat-p21 fusion peptide blocked p21 translocation to the nucleus in nocodazole-treated cells (Fig. 2G). Flow cytometric analysis at this time point showed that about 95% cells were at G2/M phase (not shown) with a cytoplasmic localization of p21 (Fig. 2G-d). In contrast, nocodazole-arrested cells showed only nuclear accumulation of p21 (Fig. 2G-c). In the asynchronous cells, the Tat-p21 fusion showed no specific effect on endogenous p21 localization (Fig. 2G-b), likely because a significant fraction of the cells already had nuclear p21. We performed control experiments showing that the Tat portion introduced as a 24-amino-acid Tat-Tat fusion does not block chromatin association of p21 or cyclin D1 in nocodazole-treated cells (see Fig. S2A in the supplemental material) and does not block p21 phosphorylation in nocodazole-exposed cells (see Fig. S2B in the supplemental material). We further show (supplemental Fig. S2C, middle panels) that the Tat-p21 fusion specifically blocks association between p21 and DAPI-positive nuclear materials, whereas cyclin D1 still localizes with DAPI-positive staining in nocodazole-treated cells. We further confirm that the Tat-Tat control peptide does not prevent association between either p21 or cyclin D1 with the DAPI-positive nuclear materials (see Fig. S2C, lower panels, in the supplemental material). Analysis of intracellular localization of p21 (wild type and different single or multiple mutant constructs of the NLS region of Flag-tagged p21) showed wild-type p21 localized to the DAPI-positive nuclear material after transfection in asynchronous or nocodazole-treated cells, while with the RKR-AAA140-142 mutant p21, about 85% of cells showed cytoplasmic staining (see Fig. S2D in the supplemental material). There was no G1 cell cycle arrest observed with these constructs after transfection. Blockade of p21 nuclear translocation leads to unphosphorylated p21 after exposure to the Tat-p21 peptide followed by nocodazole treatment, suggesting that for its phosphorylation the protein has to be translocated to the nucleus.
Interestingly, treatment of tumor cells with the Tat-p21 fusion peptide induced cell death to a much greater extent for nocodazole-treated cells than for asynchronous cells (Fig. 2H). However this result was not predictable, since p21-null cells are viable. It is possible that the lethality may have been caused by blockade of nuclear translocation of other proteins, nonspecific effects of the peptide, or other unknown targets, although it is of interest that the death was higher in nocodazole-treated cells than in asynchronous cells. We found no evidence that the Tat-p21 fusion peptide blocked chromatin association of cyclin D1 in nocodazole-treated cells. Although speculative, it is also possible that lethality may have been related to interference with endogenous p21 association with PCNA. Nonetheless, the cytotoxic effects of the Tat-p21 fusion peptide may be of interest for therapeutic purposes and may merit further study. There was no toxicity noted from the Tat-Tat control fusion peptide.
Phosphorylation of p21 at the S-G2 boundary precedes hyperphosphorylation of Cdc25C, dephosphorylation of Cdc2-Y15, and increased expression levels of cyclin B1. We explored the kinetics of p21 phosphorylation with respect to known G2/M markers and events (Fig. 3). p21 protein hyperphosphorylation was evident after 6 h of treatment of H460 cells with nocodazole (Fig. 3A), whereas in HCT116 and DLD1 cells, it was evident by 3 h (see Fig. S3A and B in the supplemental material). Hyperphosphorylation of p21 preceded the hyperphosphorylation of Cdc25C, which was evident by 9 h in nocodazole-treated H460 cells (Fig. 3A), 9 h in HCT116 cells, or 12 h in DLD1 cells (see Fig. S3A and B in the supplemental material). In each case the hyperphosphorylation of Cdc25C occurred later than p21 hyperphosphorylation. Likewise, dephosphorylation of Cdc2 at Y15 occurred in H460 cells by 9 h, coincident with hyperphosphorylation of Cdc25C (Fig. 3A). p21 hyperphosphorylation began to occur in H460 cells while cyclin A levels were high and preceded increased expression of cyclin B1, which was first noted by 9 h and became maximal by 12 h of nocodazole exposure (Fig. 3A). Interestingly, expression of cyclin B1 and Cdc2 was found to be highest between 12 and 24 h and subsequently declined while the cells remained in G2/M (Fig. 3A). Expression of p27, another cyclin kinase inhibitor, was not detected by immunoblotting in nocodazole-treated cells (data not shown). Levels of CDK2 remained constant, while as expected, cyclin A levels decreased after 15 h of nocodazole exposure. In summary, hyperphosphorylation of p21 is an early G2 event and takes place before the appearance of hyperphosphorylated Cdc25C as well as the higher expression of the main mitotic markers, i.e., before the onset of mitosis.
Delayed G2/M accumulation in p21-null cells treated with nocodazole or those released from aphidicolin block. To begin to address a functional role for p21 in regulation of the G2/M transition, we examined cell cycle progression following exposure of wild-type and p21-null cells to nocodazole or release from aphidicolin blockade. To establish that p21 is present in S and G2/M cells, flow cytometric measurement of asynchronous or cells synchronized in G1, S, or G2/M phase, stained with anti-p21 monoclonal antibody and propidium iodide, was performed. There were no p21-positive cells among DLD1 p21/ cells. However, there was a clear correlation of DNA content and the presence of p21-positive cells for asynchronous or S- and G2/M-enriched DLD1 p21+/+ cells (see Fig. S4A in the supplemental material). Figure 3B shows that p21-null HCT116 cells or p21-null DLD1 cells took a longer time to reach G2/M than the p21-proficient counterparts. For example, by 6 h of nocodazole exposure, HCT116 cells were primarily in G2/M, while there remained a significant fraction of the p21-null HCT116 cells in S phase (Fig. 3B, upper panels). In the p21-null DLD1 cells, there were more cells in G1 and S phase at 6 h compared to the wild-type p21-containing DLD1 cells (Fig. 3B, lower panels). Examination of the cell cycle profile of p21+/+ and p21/ cells showed an increase in G2/M cells after 3 h of nocodazole treatment in HCT116 and DLD1 p21+/+ cells, but it took 6 h with p21/ cells for the same pattern to appear (Fig. 3B). Interestingly, for HCT116 p21/ cells, the cell cycle profile pattern showed 8N and 16N cells after 48 h (Fig. 3B). There was also increased cell death for the nocodazole-treated p21/ cells, as reported previously (6, 71).
We also examined the entry into G2/M for wild-type and p21-null DLD1 cells released from aphidicolin blockade (Fig. 3C). The results revealed that by 3 h after release from aphidicolin blockade, wild-type p21-expressing DLD1 cells harbored detectable hyperphosphorylated p21, which persisted until 10 h after release from aphidicolin (Fig. 3C). Examination of the cell cycle profiles of wild-type p21-expressing DLD1 cells released from aphidicolin blockade revealed that 74.5 and 61.2% of the cells were in G2/M by 6 and 8 h, respectively (Fig. 3C). In contrast, the p21-null DLD1 cells showed delayed entry into G2/M after release from aphidicolin blockade, with 66.4 and 52.5% of the cells in G2/M by 6 and 8 h, respectively (Fig. 3C). There were twice as many p21-null cells (24.7%) still in S phase after release from aphidicolin blockade than with the wild-type p21-expressing released cells (12.7%). Thus, it is clear that the delayed accumulation of p21-null cells in G2/M is at least partly due to delayed entry into G2/M.
There was a similar delay in phosphoserine 10 H3-histone phosphorylation in nocodazole-treated p21/ cells compared to results with p21+/+ cells (see Fig. S4B in the supplemental material). This indicates that the delayed G2 progression in p21/ cells was also accompanied by a delay in entry into mitosis as marked by histone H3 phosphorylation. Our results reveal that the presence of p21 is critical for accumulation of cells in G2/M following nocodazole exposure. This suggests a role for hyperphosphorylation of p21 at the S-G2 transition as well as in the G2/M phase.
p21 promotes cyclin B1-Cdc2 kinase activity. Because loss of p21 has a profound effect on cell cycle progression into G2/M (Fig. 3), we examined the effect of the presence or absence of p21 on CDK2 and Cdc2 kinase activities in human cells exposed to nocodazole. Using either HCT116 or DLD1 cells (Fig. 4A), we found that cyclin B1-associated kinase activity began to rise by 9 h after exposure to nocodazole and remained high for up to 24 h. In contrast, p21-null HCT116 or DLD1 cells showed delayed appearance of cyclin B1-associated kinase activity following nocodazole exposure, with maximal levels being evident by 18 to 24 h (Fig. 4A). The delayed activation of the cyclin B1-associated kinase in p21-deficient cells appears to be due to delayed association between cyclin B1 and Cdc2. Thus, although cyclin B1 is present in the immunoprecipitates at 9 and 12 h after nocodazole exposure of p21-null HCT116 or p21-null DLD1 cells, there was relatively much less associated Cdc2 or threonine 161-phosphorylated Cdc2 (Fig. 4A). Of note, Y15-phosphorylated Cdc2, which is present in total cellular extracts of nocodazole-treated cells (see Fig. S3 in the supplemental material), was not detectably associated with the cyclin B1 immunoprecipitated from the nocodazole-exposed cells (data not shown).
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To document the effect of p21 with a different synchronization method, we examined cyclin B1-associated kinase activity following release from aphidicolin block (Fig. 4B). After release from aphidicolin, there was a significant delay in reaching maximal cyclin B1-associated kinase activity in p21-null cells versus wild-type p21-expressing cells (Fig. 4B). We observed a delay in association between cyclin B1 and either Cdc2 or T161-phosphorylated Cdc2 in p21-null cells released from aphidicolin blockade (Fig. 4B, upper panels). These results suggest that the presence of p21 promotes cyclin B1-Cdc2 kinase assembly and activity, which may be important for cell cycle progression in the G2/M phase.
While it is clear there is some delay in S phase in p21-null cells released from aphidicolin blockade (Fig. 3C), the majority of the cells have reached G2/M by 6 h after release from aphidicolin. Thus, the delayed activation of cyclin B1-Cdc2 kinase cannot be explained entirely by an S-phase block in the p21-null cells but rather by delayed kinase activation once cells have reached G2/M. In further support of this conclusion, p21 immunoprecipitates from G2/M-enriched cell populations were found to have a much higher level of kinase activity against a histone H1 substrate than complexes derived from asynchronous cells (Fig. 4C). This result shows directly that in G2/M extracts there is significant kinase activity associated with p21 that is unexpected for a kinase inhibitor.
p21 deficiency is associated with early loss of CDK2 kinase activity in G2/M. Because p21 immunoprecipitates in G2/M were associated with significant kinase activity, we wondered whether CDK2 kinase activity might be modulated by p21. Surprisingly, we found that following nocodazole exposure there was persistent CDK2-associated kinase activity up to 48 h, while in p21-null cells CDK2 kinase activity was dramatically reduced after 18 h of nocodazole exposure (Fig. 4D). We also examined CDK2 kinase activity in aphidicolin-released p21+/+ and p21/ cells and found similar results (data not shown). Thus, CDK2 was active during G2/M phase in cells containing wild-type p21. The relationship between loss of CDK2 kinase activity and lack of p21 expression in p21-null cells remains unclear.
Preferential association of hyperphosphorylated p21 with Cdc2 or cyclin B1. To begin to understand the role of p21, and specifically hyperphosphorylated p21, in regulation of cyclin B1-Cdc2 kinase activity, we examined the assembly of CDK complexes in nocodazole-treated HCT116 or H460 cells (Fig. 5). Immunoprecipitation of either Cdc2 or cyclin B1 showed preferential association to the hyperphosphorylated p21 band from HCT116 or H460 cells (Fig. 5A). In contrast, there was no preferential association between hyperphosphorylated p21 and PCNA, cyclin A, or CDK2 (Fig. 5A). These results suggest the possibility that phosphorylated p21 may specifically associate with cyclin B1-Cdc2 complexes and promote their activity. To confirm the association between p21 and cyclin B1 in human cells, we examined their colocalization by immunofluorescent staining. p21 and cyclin B1 colocalized in G2, prophase, prometaphase, and metaphase cells but not in replicating cells or anaphase/telophase cells (Fig. 5B). At the anaphase/telophase stage, p21 was still located in the nucleus but cyclin B1 was degraded and not detectable. Consistent with the predicted effect of p21 in associating with and promoting cyclin B1-Cdc2 kinase activity, we further found that there was greater accumulation of p21-null cells than of the wild-type p21-expressing DLD1 cells in prophase following release from nocodazole (Fig. 5C). We also show that cyclin A colocalizes with p21 in nocodazole-treated cells (see Fig. S5 in the supplemental material). These results further support the notion that p21 and its association with cyclin B1-Cdc2 may promote early events in progression from G2-prophase to prometaphase and metaphase, and they are consistent with earlier reports (15). However, the novel finding here is the preferential association between G2/M-specific hyperphosphorylated p21 and either cyclin B1 or Cdc2.
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p21 has three potential CDK2 consensus sites, located at Thr 57, Thr/Ser 98/99, and Ser 130. Thr 98 and Ser 99, as well as Ser 130, of p21 have been previously reported as targets for CDK2 phosphorylation in vitro or in experiments using baculovirus expression systems (33, 75). Thr 57 of p21 has been previously suggested to be a target for phosphorylation by GSK3 (58), but in the present study the GSK3 inhibitor did not prevent the phosphorylation of p21 at G2/M (data not shown) or the association between cyclin B1 and p21 (Fig. 6A). We note that at Thr 57 within p21 the peptide sequence TPLE does not represent a match to the consensus sequence for GSK3 (SXXXS) (20) but rather is a better match for a consensus for CDK2 (S/TPXX) (1). We generated HA-tagged mutants of p21 at candidate CDK2 phosphorylation sites, including the following single or multiple substitutions: T57A, TS98AA, S130A, TS98AA-S130A, T57A-TS98AA, and T57A-S130A. These CDK2-site p21 single or compound mutants were transfected individually into U2OS cells for 24 h, and this was followed by nocodazole treatment for another 18 h. Immunoprecipitation of transfected cells with HA antibody and immunoblotting with anti-cyclin B1 antibody demonstrated that Thr 57 of p21 is critical for interaction between p21 and cyclin B1 in G2/M-arrested cells (Fig. 6E to G). However, when p21 Thr 57 was replaced by glutamic acid, the interaction between p21 and cyclin B1 was detected (data not shown), confirming further that cyclin B1 interaction with the Thr 57-phosphorylated p21 is due to charge potential which may also change the conformation of p21. To demonstrate the specificity of phosphorylated Thr 57 on p21 for interaction with cyclin B1, we tested the interaction between the T57A p21 mutant and CDK2, Cdc2, or cyclin A (Fig. 6H to J). The results show clearly that transfection of the T57A p21 mutant resulted in detectable interaction between the transfected p21 and CDK2 (Fig. 6H) or cyclin A (Fig. 6J). The T57A mutant of p21 interacted poorly with Cdc2 in nocodazole-treated cells (Fig. 6I). This binding between the T57A mutant of p21 and Cdc2 suggests the possibility that CDK2-phosphorylated p21 may first bind with cyclin B1, followed by recruitment and binding of Cdc2. Another possibility is that dephosphorylation of p21 may allow release of cyclin B1 while p21 remains bound to Cdc2. It is clear from our earlier experiments that hypophosphorylated p21 can (although with reduced affinity compared to the hyperphosphorylated p21) bind with Cdc2 but not cyclin B1 (Fig. 5A).
Phosphorylated p21 specifically binds within the nuclear localization signal sequence at phosphorylated serine 126 of cyclin B1. Polo-like kinase-dependent phosphorylation on four-serine residues of cyclin B1 located within the nuclear localization signal of cyclin B1 helps entry of cyclin B1 into the nucleus at prophase (68). Our earlier experiments showed that cyclin B1 binds to phosphorylated p21 (Fig. 5A) and that phosphorylation of Thr 57 of p21 is critical for its association with cyclin B1 (Fig. 6). We therefore explored whether G2/M-dependent phosphorylation of cyclin B1 may also affect the interaction between cyclin B1 and p21 (Fig. 7). We generated individual HA-tagged cyclin B1 alanine substitution mutants at Ser 126, Ser 128, Ser 133, and Ser 147, and we obtained previously described (68) multiple mutants (Fig. 7). Immunoprecipitation of transfected U2OS cells with HA antibody and immunoblotting with anti-p21 antibody demonstrated that phosphorylated p21 binds poorly to mutants of cyclin B1 with alanine substitutions at Ser 126 (Fig. 7). This was observed with single S126A mutants or mutants containing alanine substitutions at other sites phosphorylated in G2/M, which also included the S126A substitution.
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