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Molecular and Cellular Biology, May 2005, p. 3575-3582, Vol. 25, No. 9
0270-7306/05/$08.00+0 doi:10.1128/MCB.25.9.3575-3582.2005
Copyright © 2005, American Society for Microbiology. All Rights Reserved.
Jonathan K. L. Chan,
Guang Zhu, and
Zhenguo Wu*
Department of Biochemistry, Hong Kong University of Science and Technology, Clearwater Bay, Kowloon, Hong Kong, People's Republic of China
Received 16 September 2004/ Returned for modification 26 October 2004/ Accepted 1 February 2005
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FIG. 1. MEF2 is acetylated in vitro and in vivo. (A) Schematic representation of human MEF2C protein used in this study. The numbers give the positions of amino acids marking the boundaries of domains. (B) Purified His-thioredoxin-MEF2C (lane 1) and His-thioredoxin (lane 2) were subjected to in vitro acetylation assays with the immunoprecipitated Flag-p300. The dried gel was first subjected to fluorography (top panel), followed by rehydration and Coomassie blue staining (bottom panel). Ig-H, immunoglobulin heavy chain. (C) 293T cells were transfected with the plasmid encoding Flag-MEF2C, followed by in vivo sodium [3H]acetate labeling. The immunoprecipitated Flag-MEF2 was resolved by SDS-PAGE, and the gel was subjected to fluorography (top panel). The expression level of Flag-MEF2C was detected by immunoblotting (IB) (bottom panel). (D) Proliferating (grown in GM) and differentiating (grown in DM) C2C12 cells were labeled in vivo with sodium [3H]acetate. The endogenous MEF2s were separately immunoprecipitated (IP) from GM and DM cell lysates (twice as much GM lysate was used, because the MEF2 level is lower in GM) and resolved by SDS-PAGE. The gel was subjected to fluorography (top panel). The expression levels of MEF2s (center panel) and ß-tubulin (bottom panel) present in 10% of cell lysates used in the above immunoprecipitation were revealed by immunoblotting.
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In cells, MEF2 activity is regulated by diverse signaling pathways. The p38 mitogen-activated protein kinase- and BMK1/ERK5-mediated signaling pathways directly phosphorylate MEF2A and MEF2C in their transactivation domains and enhance their transcriptional activity (11, 13, 36, 41). In addition, the calcium/calmodulin-dependent protein kinase (CaMK) and phosphatase (calcineurin) also activate the transcriptional activity of MEF2. Whereas it remains unclear how calcineurin activates MEF2, the mechanism by which CaMK activates MEF2 has recently been elucidated. MEF2 interacts directly with the class II histone deacetylases (HDACs) via the MADS/MEF2 domain (20, 21). These class II HDACs directly bind and repress MEF2 in the nuclei of undifferentiated myoblasts. Upon myogenic differentiation in response to activating signals mediated by CaMK, HDACs dissociate from MEF2, translocate to the cytoplasm, and are retained by 14-3-3 proteins. Interestingly, MEF2 is also known to interact directly with p300, a histone acetyltransferase (HAT) that antagonizes the action of HDACs (30).
Acetylation and deacetylation have been recognized as one of the most important opposing mechanisms in controlling gene expression in eukaryotes (14). While the main target of acetylation and deacetylation is histones, more recent evidence demonstrates that many cellular proteins, especially transcription factors, are also subjected to regulation by acetylation and deacetylation. For example, p53 is acetylated at multiple sites by both p300 and PCAF, which enhances its DNA binding ability, transcriptional activity, and stability (4). In myogenic cells, MyoD is mainly acetylated by PCAF at the basic domain, and acetylation promotes MyoD to bind DNA (31).
At present, it remains unclear whether MEF2 is acetylated or not in cells. Here, we provide evidence that MEF2 is acetylated during myogenic differentiation. p300 acetylated MEF2 in vitro and in vivo. Six acetylated lysines were mapped to the transactivation domain of MEF2C. Abrogation of acetylation in MEF2 reduced its DNA binding activity and transcriptional activity and inhibited myogenic differentiation.
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3xMEF2-luc, Flag-p300, and E1A have been described previously (27, 37). The form of MEF2C used in this work is a spliced variant of human MEF2C(1-473) without the coding sequence for aa 368 to 399. Single, double, triple, quadruple, and sixfold lysine-to-arginine (K-to-R) mutants were generated by PCR-based site-directed mutagenesis. Wild-type MEF2C(1-302) and its derivatives in pcDNA3 have the Flag epitope at their amino termini, while full-length MEF2C and its derivatives in pcDNA3.1 have the Flag tag at the carboxyl termini. The wild-type and mutant forms of MEF2C in bacterial expression vectors were constructed by inserting the PCR-amplified MEF2C cDNA fragments into the BamHI and NotI sites of pET32M (a gift from M. J. Zhang), resulting in fusion of His6-thioredoxin with MEF2C or its derivatives. All constructed clones were verified by sequencing.
Antibodies employed in this work include the mouse monoclonal antibodies to ß-actin (Sigma), Flag (M2; Sigma), ß-tubulin (Sigma), myosin heavy chain (MHC) (MF20; Developmental Studies Hybridoma Bank), PCAF (E-8; Santa Cruz), MEF2 (B-4; Santa Cruz), and myogenin (F5D; Santa Cruz) and the rabbit polyclonal antibodies to MEF2 (C-21; Santa Cruz) and p300 (N-15; Santa Cruz).
siRNA and plasmid transfection. All small interfering RNAs (siRNAs) were purchased from Dharmacon Inc. (Lafayette, Colo.). Sequences were as follows: for the p300 siRNA (human, sense), 5'AACAGAGCAGUCCUGGAUUAG; for the PCAF siRNA (human, sense), 5'AAUCGCCGUGAAGAAAGCGCA. 293T cells were transfected with siRNAs twice, with a 24-h interval, using LipofectAMINE 2000 (Invitrogen), followed by a third transfection with MEF2C constructs. All plasmids were transfected into cells using LipofectAMINE PLUS reagent (Invitrogen).
In vivo acetylation assays. Cells were labeled in the appropriate culture medium containing 0.3 mCi/ml sodium [3H]acetate (4.70 Ci/mmol; Perkin-Elmer) for 1.5 h. After removal of culture medium followed by washing with phosphate-buffered saline, cells were lysed in ice-cold radioimmunoprecipitation assay (RIPA) buffer (25 mM HEPES, pH 7.4, 1% [vol/vol] NP-40, 0.1% sodium dodecyl sulfate [SDS], 0.5% sodium deoxycholate) supplemented with phosphatase and protease inhibitors (20 mM p-nitrophenyl phosphate, 20 mM ß-glycerophosphate, 50 µM sodium vanadate, 2 mM dithiothreitol, 0.5 mM phenylmethylsulfonyl fluoride, 2 µg of aprotinin/ml, 0.5 µg of leupeptin/ml, 0.7 µg of pepstatin/ml). Transfected or endogenous MEF2 was immunoprecipitated from cell lysates, washed, and resolved by SDS-polyacrylamide gel electrophoresis (PAGE). The gel was soaked in Amplify solution (Amersham), dried, and subjected to fluorography at 80°C.
In vitro acetylation assays. Flag-p300 (or Flag-PCAF) was first immunoprecipitated from 400 µg of 293T cell lysates, and the in vitro acetylation assays were reconstituted in 30 µl of reaction mixture consisting of 3 µg of His-MEF2 and 0.06 µCi of [14C]acetyl coenzyme A (60 mCi/mmol; Perkin-Elmer) in HAT buffer (50 mM Tris-HCl [pH 8.0], 0.1 mM EDTA, 10% [vol/vol] glycerol, 1 mM dithiothreitol, and 10 mM sodium butyrate). Reaction mixtures were incubated at 30°C for 1 h and stopped by the addition of SDS loading buffer. Labeled proteins were resolved by SDS-PAGE. The gel was soaked in Amplify solution, dried, and subjected to fluorography at 80°C. To visualize the amount of recombinant proteins used in each reaction, the dried gel was rehydrated and stained with Coomassie blue.
Luciferase reporter assays. C2C12 cells were cotransfected with either 3xMEF2-luc or 5xGal4-luc together with various plasmids. After growth in GM for 24 h, cells were shifted to DM for an additional 12 h before harvest. Cells were lysed in ice-cold lysis buffer (50 mM HEPES at pH 7.6, 1% [vol/vol] Triton X-100, 150 mM NaCl, 1 mM EGTA, 1.5 mM MgCl2, 100 mM NaF) supplemented with protease inhibitors (see above) and subjected to luciferase assays (34). Luciferase units were normalized against the total amount of protein present in each sample, determined by a protein assay reagent from Bio-Rad (Hercules, Calif.).
Coimmunoprecipitation. C2C12 cells were cross-linked with 200 µg/ml dithiobis(succinimidylpropionate) (DSP; Pierce) for 8 min, followed by lysis in RIPA buffer. Four micrograms of anti-MEF2 antibody was first incubated with 300 µg of cell extracts in RIPA buffer overnight at 4°C with rotation; 30 µl of protein A-Sepharose beads was then added, and the mixture was incubated at 4°C for another hour with rotation. After extensive washing with the RIPA buffer, bound proteins were eluted out by boiling and subjected to SDS-PAGE and immunoblotting.
Electrophoretic mobility shift assays (EMSA). Preparation of the 32P-labeled MEF2 oligonucleotide probe has been described previously (6). Increasing amounts of Cos-7 whole-cell extracts containing either Flag-MEF2C(wt) or Flag-MEF2C(6KR) were premixed with 20 µl of binding buffer containing 1 µg of poly(dI-dC), 20 µg of bovine serum albumin, 15 mM HEPES (pH 7.6), 40 mM KCl, 1 mM EDTA, 1 mM dithiothreitol, and 5% glycerol for 30 min at 4°C. After addition of 20,000 cpm of probe, the binding reactions were carried out at room temperature for another 20 min. The samples were then loaded onto a 5% nondenaturing polyacrylamide gel, and electrophoresis was carried out at 200 V for 2 h at 4°C. The gel was subsequently dried and subjected to autoradiography.
Myogenic conversion assays. 10T1/2 cells were cotransfected with Flag-myogenin and either an empty vector (pcDNA3.1), Flag-MEF2C(wt), or Flag-MEF2C(6KR). After growth in GM for 24 h, cells were switched to DM for 5 days. Cells were then fixed with 4% paraformaldehyde, permeabilized with 0.2% Triton in 1x phosphate-buffered saline, and subjected to MHC immunostaining. Microscopy was performed using an Olympus IX70 microscope linked to a charge-coupled device digital camera (Spot RT; Diagnostic Instruments Inc., Sterling Heights, Mich.), and the images were captured using Spot RT software, version 3.4.
Multiple sequence alignment. Amino acid sequences of human MEF2A (NP_005578), MEF2C (NP_002388), and MEF2D (NP_005911); mouse MEF2A (NP_038625), MEF2C (AAH57650, and MEF2D (Q63943); Xenopus MEF2A (Q03414) and MEF2D (Q03413); and zebra fish MEF2A (NP_571376), MEF2C (NP_571387), and MEF2D (NP_571392) were aligned with Clustal W1.81.
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As MEF2 plays a key role in myogenesis, we next checked whether MEF2 is acetylated in myogenic cells. Both proliferating (grown in GM) and differentiating (grown in DM) myogenic C2C12 cells were subjected to in vivo labeling with sodium [3H]acetate. As shown in Fig. 1D, although MEF2A/2D were already present in GM (middle panel) (2), little acetylation signal was detected (top panel). In contrast, MEF2A/2D and MEF2C (induced only in DM) were significantly acetylated in differentiating C2C12 cells (top panel).
MEF2 interacts with and is mainly acetylated by p300 in vivo. Since both p300 and PCAF acetylated MEF2C in vitro, we next sought to find out which actually acetylates MEF2C in cells. siRNA against either p300 or PCAF was transfected into 293T cells together with Flag-MEF2C, followed by in vivo labeling with sodium [3H]acetate. As shown in Fig. 2A, each siRNA specifically and effectively knocked down the expression of its target (i.e., p300 or PCAF). Importantly, only the p300-specific siRNA, but not the PCAF-specific siRNA, significantly reduced MEF2 acetylation in cells (Fig. 2A, top panel). Because adenovirus E1A protein specifically binds and inactivates p300 (8, 24), we also carried out an in vivo labeling experiment with or without E1A. Consistent with our siRNA data, we found that MEF2 acetylation was significantly reduced in the presence of E1A (Fig. 2B). Next, we wanted to find out whether and when the endogenous p300 interacts with MEF2 during myogenic differentiation. C2C12 cell lysates were subjected to coimmunoprecipitation analysis. Interestingly, we found that the endogenous p300 specifically associated with MEF2 in both proliferating myoblasts and differentiating myotubes (Fig. 2C), consistent with a recent report (21a).
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FIG. 2. p300 is mainly responsible for acetylating MEF2 in vivo. (A and B) 293T cells were either transfected twice with various siRNAs as indicated and once with Flag-MEF2C (A) or cotransfected with Flag-MEF2C with or without E1A (B). Cells were labeled with sodium [3H]acetate for 1.5 h before harvest. The immunoprecipitated (IP) Flag-MEF2C was resolved by SDS-PAGE, and the gels were subjected to fluorography (A and B, top panels). The levels of the endogenous p300 and PCAF were revealed by immunoblotting (IB) (A, two center panels). The level of Flag-MEF2C in 10% of the lysates used in the above IP was detected by IB (A and B, bottom panels). (C) DSP cross-linked C2C12 cell lysates were subjected to IP with antibodies against either MEF2 or hemagglutinin (HA), followed by IB with antibodies against either p300 or MEF2 (top two panels). Ten percent of the total lysates used in the above IP assays were subjected to IB with various antibodies as indicated (bottom three panels). hr, hours.
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FIG. 3. Mapping of the p300-acetylated lysines in MEF2C in vitro and in vivo. (A to D) Similar amounts of the purified His-MEF2C and its mutants were subjected to in vitro acetylation assays using immunoprecipitated p300 and were resolved by SDS-PAGE. The gel was first subjected to fluorography (top panels). The dried gel was then rehydrated and stained with Coomassie blue (bottom panels). wt, wild type; 2KR, K116/119R; 3KR, K234/252/264R; 4KR, K234/239/252/264R; 6KR, K116/119/234/239/252/264R. (E) 293T cells were separately transfected with wild-type Flag-MEF2C and mutant Flag-MEF2C(1-302). Cells were labeled with sodium [3H]acetate for 1.5 h before harvest. The immunoprecipitated (IP) Flag-MEF2C was separated by SDS-PAGE, and the gel was subjected to fluorography (top panel). The expression levels of Flag-MEF2C and its mutants were revealed by IP followed by immunoblotting (IB) (bottom panel). (F) Different MEF2 isoforms from several vertebrates were aligned to show the four conserved lysines (equivalent to K234, K239, K252, and K264 in human MEF2C) using Clustal W1.81. h, human; m, mouse; x, Xenopus; z, zebra fish.
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Interestingly, multiple sequence alignment revealed that the four major acetylated lysines in human MEF2C (K234, K239, K252, and K264) are also fully conserved in MEF2A, MEF2C, and MEF2D of fish, frog, mouse, and human origin (Fig. 3F).
Acetylation has a minor impact on the transactivation function of MEF2C. Because all six acetylated lysines fall into the transactivation domain of MEF2C, we first tested whether acetylation affects the transactivation function of MEF2C. Expression vectors encoding Flag-MEF2C(wt) or Flag-MEF2C(6KR) were separately transfected into C2C12 cells together with a MEF2-dependent reporter, 3xMEF2-luc. We found that the acetylation-defective MEF2C mutant [MEF2C(6KR)] was about 45% less active than its wild-type counterpart (Fig. 4A). Because a defect in either the DNA binding or the transactivation function of MEF2C could account for the decreased activity of Flag-MEF2C(6KR) in the reporter assays discussed above, in order to find out whether acetylation has a direct impact on the transactivation function of MEF2C, we fused full-length MEF2C with the DNA binding domain of yeast Gal4 protein. We evaluated the transcriptional activity of the fusion protein using a luciferase reporter under the control of Gal4 binding sites. In this assay, the Gal4 DNA binding domain, but not the intrinsic MEF2 DNA binding domain, was required. As shown in Fig. 4B, Gal4MEF2C(6KR) was about 15% less active than Gal4MEF2C(wt), suggesting that acetylation has a minor impact on the transactivation function of MEF2C.
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FIG. 4. MEF2 acetylation has a minor effect on its transactivation function. C2C12 cells were cotransfected with (A) 3xMEF2-luc together with either an empty vector (control), Flag-MEF2C(wt), or Flag-MEF2C(6KR) or (B) 5xGal4-luc together with constructs expressing either Gal4DBD, Gal4MEF2C(wt), or Gal4MEF2C(6KR). After 24 h of growth in GM, cells were switched to DM for another 12 h before harvest. Whole-cell lysates were subjected to luciferase assays. The fold activation was calculated as the ratio of the normalized luciferase activity in MEF2-transfected samples to that in the control. Reporter assays were performed in duplicate three times, with similar results. Representative results showing means ± standard deviations are presented. The expression levels of the transfected Flag-MEF2C or Gal4MEF2C in the above samples were detected by immunoblotting (IB).
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FIG. 5. The acetylation-defective MEF2 mutant has reduced DNA binding activity. Portions (1, 4, and 16 µg) of Cos-7 whole-cell extracts containing either Flag-MEF2C(wt) or Flag-MEF2C(6KR) (both expressed at similar levels, as revealed by the immunoblot below the EMSA gel) were mixed with an excess of radiolabeled MEF2 probe in an appropriate binding buffer and analyzed by EMSA. Ab., antibody; Oligo., oligonucleotide; WT, wild-type Flag-MEF2C; 6KR, Flag-MEF2C(6KR).
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FIG. 6. The acetylation-defective MEF2 mutant fails to synergize with myogenin in myogenic conversion assays. (A) 10T1/2 cells were cotransfected with Flag-myogenin and either an empty vector, Flag-MEF2C(wt), or Flag-MEF2C(6KR). After 36 h of growth in GM, cells were allowed to differentiate in DM for 5 days before fixation for immunostaining (top panels) using the anti-MHC antibody (MF20) and nuclear staining with Hoechst (middle panels). Phase, phase-contrast images (bottom panels). (B) 10T1/2 cells were transfected with vectors encoding either Flag-MEF2C(wt) or Flag-MEF2C(6KR). After 24 h of growth in GM, cells were fixed and subjected to immunostaining using the anti-Flag antibody ( -Flag). Cell nuclei were stained by Hoechst.
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FIG. 7. Overexpression of the nonacetylatable MEF2 mutant inhibits myogenic differentiation. C2C12 cells were separately transfected with an empty vector, Flag-MEF2C(6KR), and Flag-MEF2C(wt). After 24 h of growth in GM, cells were switched to DM for either 12 h, 36 h, or 48 h before harvest. Portions (30 µg) of whole-cell extracts were subjected to immunoblotting (IB) for myogenin, MHC, and ß-actin. Because the Flag-MEF2C/MEF2C(6KR) levels gradually decreased in cells grown in DM, to check the expression levels of MEF2, 100 µg of whole-cell extracts from the 12-h DM incubation was first subjected to immunoprecipitation (IP) with the anti-Flag antibody ( -Flag), followed by IB with -MEF2.
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It is interesting that both p300 and class II HDACs associate with endogenous MEF2 before myogenic differentiation (Fig. 2C). Such a scenario is not unprecedented, as Sir2, PCAF, and MyoD also form a complex in undifferentiated myoblasts (9). In the case of MyoD, the reduced expression of Sir2 and the decreased [NAD+]/[NADH] ratio at the onset of differentiation help to promote MyoD acetylation by PCAF (9). In the case of MEF2, the cytoplasmic translocation of class II HDACs in response to CaMK signaling at the beginning of differentiation should facilitate subsequent MEF2 acetylation by p300 (20, 21).
We also noticed that the overexpressed MEF2 in both proliferating myoblasts and several nonmuscle cells (e.g., 293T and Cos-7 cells) was already acetylated (Fig. 1C and Fig. 2A and B). Based on our previous studies and our present work (6), we believe that MEF2 normally complexes with both p300 and HDACs and that the numbers of MEF2s and class II HDACs in cells are well balanced, such that the endogenous MEF2s are normally bound and repressed by HDACs and are thus deacetylated. Overexpression by transfection causes MEF2 to outnumber the endogenous HDACs, resulting in enhanced MEF2 acetylation by the bound p300.
The functional role of acetylation for MEF2. Even though the p300 acetylation sites on MEF2 are not within the N-terminal MADS/MEF2 DNA binding domain, we show that acetylation at these sites can affect MEF2 DNA binding (Fig. 5). This is reminiscent of p53 acetylation by p300, as acetylation of p53 on multiple sites at the C-terminal regulatory domain affects the function of its DNA binding domain in the middle of the protein, presumably through an altered conformation (4, 10). In addition, we also show that MEF2 acetylation affects the transactivation function of MEF2 to some extent. The exact underlying mechanism remains unclear at present. It is conceivable that acetylation can alter the conformation of MEF2 such that MEF2 efficiently recruits a transcriptional coactivator or interacts with the basal transcriptional machinery. Alternatively, acetylation at the transactivation domain of MEF2 may weaken or dissociate the binding of a transcriptional repressor (e.g., Twist) to MEF2 (33). Further investigation is needed to address this issue.
It is noteworthy that four major acetylatable lysines (K234/239/252/264) in human MEF2C are also fully conserved in MEF2A, MEF2C, and MEF2D across several different species (Fig. 3). This suggests that MEF2 acetylation by p300 at these sites is a general mechanism conserved in vertebrates. Although we have studied the acetylation of MEF2C here in the context of myogenesis, it is conceivable that the other MEF2 isoforms are similarly regulated by acetylation and that such an event may also take place and play a key role in other biological processes, including T-cell development, cardiogenesis, and neurogenesis.
This work was supported by grants from the Hong Kong Research Grant Council (HKUST6139/03M to G.Z. and HKUST6143/03 M to Z.W.), EHIA funding for cell signaling studies from HKUST, and the Areas of Excellence scheme established under the University Grants Committee of the Hong Kong Special Administrative Region, China (project AoE/B-15/01).
K.M. and J.K.L.C. contributed equally to this work. ![]()
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