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Molecular and Cellular Biology, January 2006, p. 643-653, Vol. 26, No. 2
0270-7306/06/$08.00+0 doi:10.1128/MCB.26.2.643-653.2006
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Tomasz Zemojtel,3,4,
*
Mateusz Kolanczyk,5
Steffen Grossmann,3
Jürgen S. Scheele,1,6 and
Fried J. T. Zwartkruis7
Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany,3 Department of Medicine I,1 Department of Biology I, University of Freiburg Medical Center, D-79106 Freiburg, Germany,2 Department of Development and Disease, Max Planck Institute for Molecular Genetics, Ihnestrasse 73, D-14195 Berlin, Germany,5 In silico Miners, ul. Chopina 13/10, 81-782 Sopot, Poland,4 Department of Pharmacology I and Clinical Trials Center, University of Freiburg Medical Center, D-79104 Freiburg, Germany,6 Department of Physiological Chemistry and Centre for Biomedical Genetics, University Medical Centre Utrecht, Universiteitsweg 100, 3584 CG Utrecht The Netherlands7
Received 19 August 2005/ Accepted 24 October 2005
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In order to directly assess the function of one of the Rap1 isoforms, Rap1A, we generated knockout mice by homologous recombination. Analysis of these mice reveals that Rap1A is dispensable for viability or fertility. The major defect observed thus far is in cell adhesive properties of cells from the immune system. Despite the reduced activity in cell adhesion assays, the immune system does not show any obvious defects in differentiation or maturation of lymphoid cells.
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FIG. 1. Generation of Rap1A knockout mice. (A) Schematic map of the Rap1A gene locus (exons 2 to 4 are shown), targeting construct, and recombinant allele. The black rectangles represent coding exons. The 5-kb targeting cassette contains an IRES sequence, ß-galactosidase gene (LacZ), and the neomycin gene (NEO). The 3' external probe used for probing the genomic blot is shown in panel B as a solid black box under the targeted allele. Restriction enzyme sites: B, BamHI; H, HindIII; P, PstI. (B) Southern blot analysis of the Rap1A gene. DNA was prepared from mouse tails, digested by the ApaI restriction enzyme, and hybridized with 3' external probe. The wild-type allele generated a 22-kb band, and the targeted allele generated a 14-kb band. (C) PCR-based genotyping of Rap1A knockout. ForPrimer1 and RevPrimer1 generated a 1.2-kb band from the wild-type allele. ForPrimer2 and RevPrimer2 produced 0.6-kb band from targeted allele. (D) ß-Galactosidase staining in whole-mount embryonic day 12.5 / embryo. (E) Western blot for Rap1A protein. Proteins extracts from thymus and spleen were analyzed by Western blotting with Rap1A-specific antibodies. Rap1A band is absent in protein extracts isolated from / mice. -Tubulin was used as a loading control.
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Mouse genotyping-Southern blotting and PCR. Genotyping was performed on DNA extracts prepared from mouse tails. DNA was digested with ApaI and analyzed by Southern blotting. Using a 3' Rap1A external probe, the recombinant allele is detected as a 14-kb band, whereas the wild-type allele is 22 kb. In addition, mice were genotyped by PCR with ForPrimer (5'-GTTACTCCATATCAACCATTG-3') and RevPrimer1 (5'-CCACCTCACTTTCTCCCAC-3') to produce a 1.2-kp product specific for the wild-type allele or ForPrimer and RevPrimer2 (5'-CCAAGGACTACTAGCTTGTACTCACG-3') to generate a 0.6-kp product specific for the targeted allele.
RT of Rap1A mRNA. RNA was isolated from mouse organs by using RNA isolation kit (QIAGEN). RNA was treated with DNase I to remove DNA. RNA was reverse transcribed into cDNA by using reverse transcriptase (Gibco). Standard PCR was carried out on a cDNA template. Two primers were used: 5'Primer (5'-GCGGGATTGTCAATATTTAAAC-3') and 3'Primer (5'-GCCATAGAAATCAGTTATCCC-3'), which generated a product of 1,186 bp. Reverse transcription-PCR (RT-PCR) products were cloned into TOPO cloning vector (Invitrogen) and sequenced by using vector primers (Invitrogen).
Flow cytometric analysis.
Single cell suspensions were prepared from the thymus, spleen, and peripheral lymph nodes. The cells were first blocked with CD16/CD32 blocking antibodies and later stained with specific antibodies against surface markers labeled with fluorescein isothiocyanate (FITC), APC, phycoerythrin (PE), or PER-CY5. Staining was performed for 15 min at 4°C and subsequently washed two times with PBS. Fluorescence was measured in a DakoCytomation FACS Analyzer (CYAN). Antibodies to the following surface markers were used in these studies: CD4, CD8, CD3, B220, CD45, CD44, CD25,
ßTCR, CD69, CD5, ScaI, LFA-1(CD 11a), and VLA-4(CD 49d). All antibodies were purchased from Pharmingen.
GST pull-down assay.
About 2 x 107 of thymus or spleen cells were left untreated or stimulated with TPA (12-O-tetradecanoylphorbol-13-acetate; 50 ng/ml) for 5 min at 37°C in RPMI medium. Stimulation was interrupted by adding of 5 volumes of ice-cold lysis buffer (50 mM Tris [pH 7.5], 150 mM NaCl, 0.5% Triton X-100, 1 mM phenylmethylsulfonyl fluoride, 2 µg of aprotinin/ml, 2 µg of leupeptin/ml, 0.1 mM Na3VO4, 10 mM NaF). Lysis was performed for 45 min on ice. The extracts were centrifuged at 15,000 x g for 15 min at 4°C. Supernatants were collected, and 5 µg of RalGDSRBD-glutathione S-transferase (GST), precoupled to glutathione-agarose beads, was added. Samples were mixed with slow agitation for 1 h at 4°C. The beads were washed three times with lysis buffer, and 30 µl of 1x Laemmli buffer was added. Proteins isolated in pull-down assays or present in total lysates were separated by sodium dodecyl sulfate-15% polyacrylamide gel electrophoresis, transferred to polyvinylidene difluoride membranes, and detected with antibodies to
-tubulin and GAPDH (glyceraldehyde-3-phosphate dehydrogenase; both purchased from Santa Cruz Biotechnology, Santa Cruz, CA), both Rap1 isoforms (SC-65; Santa Cruz, California), or Rap1A (kindly provided by V. Pizon). The signal was detected by enhanced luminescence (Amersham Biotechnologies).
Adhesion assay. The adhesion assay was based on previous reports (28). Maxisorb 96-well plates (Nunc) were coated with the indicated concentrations of fibronectin (Sigma) or murine ICAM-FC (R&D Systems) in PBS at 4°C. Wells were washed three times with PBS and blocked with 2% bovine serum albumin (BSA) in Hanks balanced salt solution (HBSS; Invitrogen) for 1 h at 37°C. Fresh thymus or spleen cells were incubated 10 min in erythrocyte lysis buffer (Stem Cell Technology) to remove erythrocytes and then washed in RPMI and stained in 2.5 µM BCEF-AM (Calbiochem)-HBSS for 30 min at 37°C. After staining, the cells were washed three times in HBSS medium and resuspended in RPMI medium-0.5% BSA. The blocked 96-well plates were washed three times with 0.5% BSA-HBSS. A total of 106 cells were loaded in one well in a volume of 100 µl. Then, 50 µl of TPA was added to obtain a final concentration of 50 ng/ml. The cells were left to adhere for 30 min at 37°C. Nonadherent cells were removed by three washing steps with warm 0.5% BSA-RPMI. Adhesion was measured in spectrofluorometer at an excitation of 485 nm and an emission of 530 nm. The adhesion was counted as a percentage of total cell input (measured before incubation) added to the well.
Proliferation assay. T cells were isolated from spleen by using Pan T-cell kit (MACS) by magnetic sorting. We coated 96-well plates with 1 µg of murine anti-CD3 (145-2C11) or 1 µg of anti-CD3 and anti-CD28/ml. A total of 105 cells were plated per well, and stimulation was performed for 48 h at 37°C. As a positive control, cells were stimulated with 30 ng of TPA/ml plus 100 ng of ionomycin/ml. After the stimulation, 1 µCi of [3H]thymidine (Amersham Biosciences) was added, and cells were further incubated for 18 h. Labeled DNA from cells was collected on GSC filters. Radioactivity was measured in a microplate scintillation counter (Packard).
IL-2 measurements. Cell medium was collected from CD3 and CD3/CD28- or TPA-stimulated cells after 48 h. The interleukin-2 (IL-2) concentration was determined by using a BD OptEIATM Mouse IL-2 ELISA set (BD Biosciences).
Immunofluorescence staining. To assess T-cell polarization, T cells were first incubated with anti-CD3 (10 µg/ml) for a half an hour at 4°C and then washed two times with cold RPMI incubated with anti-American hamster immunoglobulin G (10 µg/ml) for 30 min on ice. After two washing steps in cold RPMI, the cells were stimulated at 37°C for 3 min or left unstimulated at 4°C. The cells were fixed in suspension in 3.3% paraformaldehyde and mounted on poly-L-lysine-coated slides and then blocked with1% BSA. The cells were stained with anti-LFA-1 (1:1,500; Pharmingen). The fluorescence was visualized on Zeiss microscope using x63 magnification. The cells were assessed for polarization of LFA-1 as described previously (12). Briefly, photos of 10 fields, each comprising 40 to 50 cells, were obtained for each treatment. Cells with LFA-1 polarized to one side of cell were regarded as polarized; those showing equal distribution of LFA-1 were considered not polarized. The percentage of polarized cells in each photographed field was counted.
Statistical methods. Analysis of proliferation and IL-2 production ratios were done by fitting a two-factor log-linear model to each of the datasets and performing an analysis of variance. As factors we used the type of treatment (CD3, CD3/CD28, and TPA/ionomycin) and the type of mouse (knockout and wild type).
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Northern blotting of mRNA from tissues of homozygous knockout mice, using a probe against the complete coding sequence, did not reveal the expected lack of Rap1A RNA but instead revealed the presence of a slightly shorter message (data not shown). We therefore cloned and sequenced cDNA of Rap1A from homozygous mutant mice. The cDNAs were derived from shortened WT mRNA, lacking the first 19 codons, which resulted from insertion of the targeting vector. However, the IRES/LacZ/neomycin cassette was absent due to the usage of a cryptic splice site at the 5' region of the cassette. Nevertheless, we were able to detect LacZ mRNA by RT-PCR, but we could not detect a fusion mRNA of IRES/LacZ/neomycin with the 5' end of Rap1A. Staining of Rap1A/ embryos at day 12.5 post coitus for ß-galactosidase (Fig. 1D) also confirmed the stability of the LacZ transcript. In conclusion, mRNA from the targeted Rap1A allele lacks the first 19 codons, whereas eventual translation from a further downstream located ATG would result in 51-amino-acid-shorter protein product.
To establish that the Rap1A gene had been successfully targeted a Western blot with lysates from embryonic thymus and spleen was probed with an antibody raised against Rap1A (kindly provided by V. Pizon). This antibody is almost specific for Rap1A and only weakly recognizes overexpressed Rap1B (unpublished data). As can be seen in Fig. 1E, no Rap1A protein was detected in these lysates. From these results we conclude that the Rap1A gene has been successfully targeted.
General phenotype of Rap1A-deficient mice. Rap1A-deficient mice appeared to be fully viable and fertile. Growth rates of pups as determined by measuring their weight between weeks 2 and 8 after birth were not different from that of wild-type littermates (data not shown). The life span of Rap1A mutant mice did not differ from that of wild-type littermates. In addition, no obvious behavioral abnormalities were noted in Rap1A mutants.
Immunological phenotype of Rap1A knockout mice.
Given the fact that genetic disruption of the RapGAP Spa1 resulted in T-cell anergy and altered memory responses (14), we set out to investigate the different lymphoid compartments in Rap1A mutant mice. T-cell maturation, as measured by the relative fraction of CD4/8 double-negative (DN), single-positive (SP), and double-positive (DP) cells in the thymus, appeared to be normal (Fig. 2A). Furthermore, expression profiles for TCR
ß, CD5, or CD69 in SP, DP, and DN populations of Rap1A/ thymocytes appeared to be indistinguishable from that of wild-type mice and demonstrated unperturbed positive selection in Rap1A/ mouse (Fig. 2B).
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FIG. 2. Normal differentiation in thymuses of wild-type and Rap1A/ mice. (A) Expression pattern for CD4 and CD8. (B) CD44 and CD25 expression in CD4 CD8population. Thymocytes were four-color stained for CD4, CD8, CD44, and CD25 markers. The results are representative for one of 10 sets of wild-type and Rap1A mutant mice. (C) Positive selection in the thymus is intact in Rap1A/ mice. The thymus was three-color stained for CD4 PE, CD8 APC, and FITC-labeled ßTCR, CD69, or CD5. Expression profiles for each FITC marker were measured in each CD4/CD8 population.
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Also, separation of spleen cells by FACS stained with CD4/CD8, CD3/CD45, or B220/CD45 gave identical patterns for Rap1A mutant and wild-type cells (data not shown). Homing of peripheral T cells into lymph nodes, as investigated by studying the expression of B220, CD4, and CD8 on cells isolated from lymph nodes, was not affected (Fig. 3). In the bone marrow, FACS analysis with anti-B220, Mac-1, NK-1, GR-1, and SCA-1 did not reveal differences between Rap1 and wild-type mice (data not shown). Moreover, we did not find any abnormalities in the absolute number of thymus and spleen cells. Neither lymphocyte nor thrombocyte numbers in blood were altered in Rap1A/ mice (data not shown). We conclude from this analysis that the immune system of Rap1A mutant mouse is largely intact. We do realize, however, that certain defects, e.g., in thymocyte selection or homing, may have gone undetected in our FACS analysis.
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FIG. 3. Homing of T and B cells into peripheral lymph nodes is unperturbed in Rap1A/ mice. Overlay histograms show CD4, CD8 and B220 expressions in peripheral lymph nodes of wild-type mice and / mice.
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Spleen cells from wild-type mice clearly adhered better to fibronectin, a ligand for
4ß1 integrins (VLA-4), than cells isolated from Rap1A mutant mice. If spleen cells were allowed to adhere for 30 min, about two times as many wild-type cells were bound to fibronectin than Rap1A mutant cells (Fig. 4A). Upon stimulation with 50 ng of TPA/ml, a twofold increase in adhesion was seen for both cell populations, meaning that a significant difference was still seen. Adherence to ICAM, which is mediated via LFA-1, was slightly decreased in the case of Rap1A mutant cells. However, the difference in the number of adherent cells was more pronounced (about twofold), after stimulation with TPA (Fig. 4A). Separated T and B cells from spleen showed that both cell types from Rap1A knockout mice had an impaired capacity to bind to ICAM-FC, although adhesion could still be increased by TPA treatment (Fig. 4B). Furthermore, thymus cells from wild-type mice adhered better to either fibronectin or ICAM-FC (Fig. 4C). Stimulation of both wild-type and mutant cell populations with TPA increased adhesion, but again the number of adherent cells from Rap1A mutant mice remained significantly decreased. Importantly, disruption of Rap1A did not change the level of LFA-1 cell surface expression or VLA-4, as shown by FACS analysis for thymus and spleen (Fig. 4D).
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FIG. 4. LFA-1- and VLA-4-dependent adhesion is impaired in Rap1A/cells from the thymus and spleen. , adhesion of wild-type mice; , adhesion of Rap1A/ mice. Each bar represents an average value of four independently performed experiments. (A) Adhesion of spleen cells on fibronectin and ICAM. (B) Adhesion of separated T and B cells from spleens. The adhesion of T on ICAM and of B cells on ICAM and fibronectin is shown. (C) Adhesion of thymus cells on ICAM and fibronectin. (D) Equal expression of LFA-1 and VLA-4 in wild-type and Rap1A/ mouse. The isotype control is shown as a vertical-line histogram. Diagonal-line histograms represent cells stained with anti-LFA-1 or anti-VLA-4.
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FIG. 5. Activity of Rap1 (Rap1GTP) in cell extracts derived from the spleen and thymus is decreased in Rap1-deficient mice. (A) GTP-bound Rap1 was isolated by using RalGDS-RBD from spleen cells before and after stimulation with TPA and detected by Western blotting with a Rap1 antibody (upper panel). Total Rap1 and Rap1A were detected in total lysates (middle two panels) by using an antibody that detects both Rap1 isoforms and one that is specific for Rap1A. Equal loading was confirmed by probing for GAPDH. (B) Detection of GTP-bound Rap1A in thymus cells as described for panel A for spleen cells. (C) Detection of GTP-bound Rap1A in T cells isolated from spleen as described for panel A for spleen cells. (D) T cells were induced with anti-CD3 antibodies for various periods of time. The cell extracts were subjected to Rap1 GST pull-down assay, and then the samples were analyzed by Western blotting. Rap1 activity (Rap1GTP) and total Rap1 (Rap1) was detected by using anti-Rap1 antibodies. In addition, the cell extracts were tested for activation of ERK1 and ERK2 (p-ERK1/2) by using anti-phospho ERK antibodies.
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FIG. 6. Analysis of Rap1a, knockout/wild-type ratios (KO/WT) of proliferation responses and IL-2 production to CD3, CD3/CD28, and TPA/ionomycin stimuli in T cells. The asterisks above the error bars indicate the significance of the results:
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FIG. 7. CD3 induced LFA-1 polarization on the surface of T cells. (A) Examples of polarized and nonpolarized T cells. (B) LFA-1 polarization was assessed by determining the percentage of polarized cells in the fields of about 50 cells. Ten fields were counted for each treatment. Similar results were obtained in three independent experiments. Results for wild-type ( ) and Rap1A/ ( ) mice are shown.
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To probe for Rap1A-specific functions, we created a null mutation by removal of the N-terminal coding regions from the Rap1A locus. Homozygous mutant mice appear viable and fertile without any gross morphological or behavioral changes. Also, an extensive survey of hematopoietic characteristics did not reveal any striking phenotypes. For example, analysis of thymocytes showed the presence of all expected classes of DN, DP, and SP CD4/CD8 cells in very similar ratios, whereas also the distribution of markers such as TCR
ß, CD5, or CD69 appeared to be unaffected. However, when the adhesive properties of T and B cells were tested by using fibronectin- and ICAM-coated surfaces, a clear decrease in the adhesion of cells derived from Rap1A knockout mice was seen. Reduced binding was not a consequence of lowered expression of
4ß1 integrins (VLA-4), the receptors for fibronectin or LFA-1, which binds ICAM. Binding of Rap1A/ cells to two different substrates was not completely abrogated, which is most likely due to the presence of Rap1B in these cells. Indeed, Western blotting with an anti-Rap1A antibody, which only slightly cross-reacts with Rap1B, confirmed the absence of Rap1A, but an antibody that recognizes both Rap1A and B (SC-65) showed the residual presence of Rap1 in these cells. Also, the fraction of GTP-bound Rap1 was lowered, but a clear signal from Rap1B could still be detected. Interestingly, while the present study was in review, Chrzanowska-Wodnicka et al. reported that in Rap1B knockout mice platelet aggregation, which is dependent on
IIbß3 integrin activation, is defective (5). In addition, bleeding defects cause lethality of more then 40% of the embryos. This latter effect may not be caused by impaired platelet function but results from endothelial defects. Indeed, the permeability of endothelial cells has been described as under the control of the cyclic AMP-regulated, Rap-specific GEF Epac (7, 9, 33). Given the different defects in integrin functioning seen in Rap1A and 1B knockout mice, it will be interesting to see what the compound phenotype is. Apart from Rap1B, Rap2 isoforms may function redundantly with Rap1A. Indeed, in most tissue culture experiments reported, all of these isoforms are likely blocked by overexpression of RapGAPs or Ras-binding domains. Furthermore, Rap1-independent cell adhesion mechanisms may exist. For example, in studies performed in T cells from lymph nodes overexpressing the RapGAP Spa1, an effect of cell adhesion after stimulation with SCF was seen but not after treatment with TPA (29). To what extent the adhesion phenotype is caused by a less efficient polarization of these cells is currently unclear. However, it should be noted that T cells expressing Rap1V12 display both increased adhesiveness and a polarized phenotype (29). Notably, not all primary cells derived from knockout mice display a diminished adhesive capacity on fibronectin and ICAM. MEFs isolated from wild-type and knockout mice behave identically in an adhesion assay (unpublished observation). This may be a consequence of a relatively higher level of Rap1B in these cells, but it is also possible that the higher basal level of adhesion obscures differences between both cell populations.
As stated above, Rap1A deficiency appears not to result in defective immune functions. This clearly contrasts with findings in mice in which the Rap1 effector RAPL has been disrupted (17). Here, both cell trafficking and homing of lymphocytes are severely affected. Also, in LFA-I knockout mice these functions are compromised (1).
One of the other pathways in which Rap1 is involved is triggered by activation of the TCR and leads to the stimulation of proliferation of T cells. Our in vitro studies revealed a significant defect in proliferation after CD3 stimulation of Rap1A/ cells. Strikingly, this effect was not as pronounced if T cells were stimulated simultaneously with CD3 and CD28 (Fig. 6A). Previously, T-cell anergy has been claimed to rely on a block in IL-2 production as a result of activated Rap1 (2). However, in an in vivo model it was shown that expression of activated Rap1 resulted in an enhanced immune response with no detectable proliferative defects (28). On the other hand, examples of knockouts of ADAP genes working down from the TCR, such as Fyb/Slap (12) or Slap-130Fyb (24), show that defects in integrin activation correlate with impaired IL-2 production and cell proliferation. It is possible that weaker proliferation responses of Rap1/ T cells are a secondary consequence of adhesion defect.
In summary, our studies define a role for Rap1A in integrin-mediated adhesion, but the lack of Rap1A does not lead to severe immunological phenotypes. Since it is likely that Rap1B successfully substitutes for Rap1A in many cells, generation of Rap1 double mutants will help to further define the physiological role of these Ras-like GTPases.
We thank Johanes L. Bos for valuable discussions and a critical reading of the manuscript. We thank Véronique Pizon for providing Rap1A-specific antibody. M.D. thanks Reinchard Marks for providing CD3 and CD28 antibodies. We thank Claudia Orelio for helpful comments on the analysis of hematopoietic cells.
M.D. and T.Z. contributed equally to this study. ![]()
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Mß2 by LPS and other inflammatory mediators. Curr. Biol. 10:974-978.[CrossRef][Medline]
3ß1 integrin but not the
6ß4 integrin. J. Biol. Chem. 279:44889-44896.
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