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Molecular and Cellular Biology, October 2006, p. 7707-7718, Vol. 26, No. 20
0270-7306/06/$08.00+0 doi:10.1128/MCB.00849-06
Copyright © 2006, American Society for Microbiology. All Rights Reserved.
Cancer Research UK Institute for Cancer Studies,1 School of Biosciences, The University of Birmingham, Edgbaston, Birmingham, United Kingdom2
Received 12 May 2006/ Returned for modification 13 June 2006/ Accepted 7 August 2006
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The aim of this study was to identify new cytoplasmic components of TERM. We found that the tetraspanin CD63 directly interacts with syntenin-1, a double PDZ domain-containing protein. The tetraspanin CD63 is a ubiquitously expressed protein which is found in various late endocytic organelles (e.g., lysosomes, platelet dense granules, and Weibel-Palade bodies) and on the plasma membrane. CD63 interacts with other tetraspanin family members and can be coimmunoprecipitated with nontetraspanin TERM components such as integrins (3). Recent data have shown that CD63 is associated with, and plays an important role in, endocytosis of the H,K-ATPase in gastric parietal cells (11). Whether CD63 is involved in the regulation of trafficking routes of other associated proteins remains unknown. The cellular distribution and dynamics of the protein at the plasma membrane are controlled by its C-terminal tyrosine-based sorting motif (G-Y-E-V-M) (34). The direct interaction between this sequence and µ2 and µ3 subunits of the AP-2 and AP-3 complexes, respectively, would link most of the intracellular CD63 trafficking to clathrin-dependent pathways (22, 34). However, recent data also suggested that an AP-2/AP-3-independent pathway(s) may contribute to trafficking of CD63 (22).
Syntenin-1 was originally described as a syndecan-associated protein (17). Later studies have shown that syntenin-1 also interacts with various other transmembrane and cytoplasmic partners through one of its two PDZ domains (36). Notably, despite a clear preference towards a specific PDZ domain, typically PDZ2, interactions with most of its protein partners require the presence of both domains. In addition, both PDZ domains are reportedly required for binding of syntenin-1 to phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2], with PDZ1 being most important (43). At the cellular level, syntenin-1 is known to regulate cell migration and adhesion-dependent signaling and promotes cancer metastasis (8, 26). It has been suggested that this function of syntenin-1 may be linked to its ability to regulate trafficking of the associated proteins (13, 45).
In this report, we show that the interaction between the tetraspanin CD63 and syntenin-1 is direct, takes place on the plasma membrane, and also requires both PDZ domains, with PDZ1 playing a pivotal role in complex formation. In addition, we found that the C-terminal 17 amino acids of syntenin-1 are critical for its interaction with CD63 in cells. Finally, we established that the overexpression of syntenin-1 decreases the rate of constitutive internalization of CD63.
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Plasmids and transfection. The cDNAs encoding human syntenin-1 (TACIP-18) and the HA-tagged form of syntenin-2 (TACIP) in pcDNA3.1/Zeo(+) were provided by J. Arribas (Vall d'Hebron Research Institute University Hospital, Barcelona, Spain). The cDNA encoding human CD63 in pZeoSV was described previously (5). The plasmid encoding the GST-tagged form of human syntenin-1 was obtained from T. Cierpicki and Z. Derewenda. The plasmid encoding the Flag-tagged NF-2 was kindly provided by M. Crompton (Royal Holloway University of London, United Kingdom). DNA constructs encoding various mutants of syntenin-1 and CD63 were produced by a standard PCR (sequences of the primers are available upon request). Transfection experiments were carried out using Fugene 6 (Roche) according to the manufacturer's instructions. For transfection with small interfering RNA (siRNA), HeLa cells were detached and electroporated with a single pulse at 250 V and 250 µF using a GenePulser Xcell electroporation system (Bio-Rad) and 2.5 µM of siRNA duplex. The efficacy of knocking down was assessed 48 h later by Western blotting as described below. The following siRNA was found to be effective in the knockdown experiments: 5'-GCUAUAGCAUAGCUGCUUATT-3'. Silencer negative control no. 1 siRNA was purchased from Ambion (catalog no. 4611).
Immunoprecipitation and Western blotting. The proteins were solubilized into the immunoprecipitation buffer containing 0.8% Brij 98-0.2% Triton X-100-phosphate-buffered saline (PBS) (or 0.5% Brij 98-0.5% Triton X-100-PBS), 2 mM phenylmethylsulfonyl fluoride, 10 µg/ml aprotinin, and 10 µg/ml leupeptin for 4 to 16 h at 4°C. The insoluble material was pelleted at 12,000 rpm for 10 min. The cell lysates were then precleared by incubation for 2 h at 4°C with agarose beads conjugated with goat anti-mouse antibodies (mouse immunoglobulin G [mIgG] beads; Sigma). Immune complexes were collected using appropriate MAbs prebound to the mIgG beads and washed four times with the immunoprecipitation buffer. The anti-green fluorescent protein MAb (3E1) was used as a negative control in all immunoprecipitation experiments. The complexes were eluted from the beads with Laemmli sample buffer. Proteins were resolved in sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to the nitrocellulose membrane, and developed with the appropriate Ab. Protein bands were visualized using horseradish peroxidase-conjugated secondary antibodies (Sigma) and enhanced chemiluminescence reagent (Amersham Pharmacia Biochem).
Immunoprecipitation of the cell surface pool of CD63. CHO cells were transfected with the plasmids encoding the HA-tagged form of syntenin-1 and human CD63. Forty-eight hours after the transfection, the cells were washed with ice-cold DMEM and incubated for 1 h at 4°C with purified anti-CD63 MAb (6H1) or with the control MAb. Subsequently, the cells were washed three times with ice-cold DMEM and lysed in the immunoprecipitation buffer containing 0.8% Brij 98-0.2% Triton X-100-PBS and the protease and phosphatase inhibitors. Immunoprecipitation and analysis of the CD63-containing complexes were carried out as described above.
Biotinylated peptides, and pull-down, and enzyme-linked immunosorbent assays (ELISA). N-terminally biotinylated peptides corresponding to the C-termini of tetraspanins were synthesized by AltaBioscience (Birmingham, United Kingdom). The following tetraspanin peptides were used: CD63, VKSIRSGYEVM; CD151, YRSLKLEHY; SAS, RNQKDPRANPSAFL; CD9, AIRRNREMV; and CD82, VHSEDYSKVPKY. For the pull-down experiments, 293T cells, ectopically expressing HA-tagged syntenins, were lysed overnight in the immunoprecipitation buffer (0.5% Brij 98-0.5% Triton X-100-PBS) containing protease and phosphatase inhibitors. Biotinylated peptides were conjugated to avidin-agarose (Sigma) for 2 h at 4°C in the washing buffer (0.5% Brij 98-0.5% Triton X-100-PBS) and subsequently incubated with the cell lysates for 5 to 16 h at 4°C. After three washes, pulled-down proteins were eluted from agarose into 1x Laemmli buffer, boiled, and resolved in SDS-PAGE. The proteins were then transferred to the nitrocellulose membrane and probed with the anti-HA tag rabbit polyclonal antibodies. The GST-tagged recombinant syntenin-1 proteins for ELISA were produced in the BL21 strain of Escherichia coli by using a standard protocol. The proteins (0.5 µg) were immobilized on 96-well plates overnight in 50 µl of coating buffer (0.1 M Na2HPO4, adjusted to pH 9 with 0.1 M NaH2PO4) at 4°C. Plates were then washed gently twice in PBS-Tween (0.05%). The wells were then incubated in blocking buffer (2% bovine serum albumin in PBS-Tween [0.05%]) for 1 h at 37°C and subsequently washed once with PBS-Tween (0.05%). Biotinylated peptides at a range of concentrations (made up in 50 µl of blocking buffer) were added to the wells and incubated for a minimum of 2 h at 37°C. After the incubation period, the plates were washed four times in PBS-Tween (0.05%), followed by addition of streptavidin-horseradish peroxidase (1:2,000 in blocking buffer) and subsequent incubation for 1 h at room temperature. Wells were washed eight times in PBS-Tween (0.05%) and 100 µl of 3,3',5,5' tetramethylbenzidine (Tebu-bio Laboratories) was added. The reaction was allowed to proceed for 20 min and then stopped by the addition of 100 µl 1 M HCl. Levels of binding were analyzed by measuring absorbance at A450 using a plate reader.
NMR spectroscopy and C-terminal peptide ligand titration.
For the heteronuclear magnetic resonance spectroscopy (NMR) analysis of syntenin-1 and CD63 interaction, uniformly 15N-labeled syntenin-1 PDZ tandem domain (113 to 273), referred to as "syntenin-1 PDZ12," was expressed as a GST fusion in Escherichia coli BL21 (DE3) at 25°C in M9 minimal medium using 15NH4Cl as the sole nitrogen source. The purification of GST-fused protein was performed as reported previously (24). The NMR samples contained 200 µM protein, 150 mM NaCl, 500 µM TCEP [Tris(2-carboxyethyl)phosphine], and 50 µM AEBSF in 50 mM Tris buffer (pH 7.5). All NMR spectra were recorded at 30°C on a Varian Inova 800-MHz spectrometer equipped with a room temperature 5-mm 1H/13C/15N z-axis pulse field gradient probe, with data processed using the Azara package and analyzed using Ansig (28). Earlier chemical shift assignments (9) were confirmed by tracing sequential nuclear Overhauser effect connectivities across the protein backbone from a three-dimensional heteronuclear single quantum correlation (HSQC)-nuclear Overhauser effect spectroscopy spectrum recorded with a mixing time of 150 ms using a 400 µM sample of 15N-labeled syntenin-1 PDZ12 protein. Synthesized C-terminal CD63 peptide (RVKSIRSGYEVM) was purchased from Sigma-Genosys and contained an extra Arg residue at the N terminus, to improve peptide solubility. Titrations of syntenin-1 PDZ12 proteins with C-terminal CD63 peptide were conducted by recording a series of 1H,15N HSQC spectra of 15N-labeled protein (200 µM), with increasing molar concentrations of the peptide ligand, up to a protein-to-peptide ratio of 1:8. Some amide proton resonances were obscured at pH 7.5 due to rapid exchange with solvent, and hence the peptide titration was also performed at pH 6.5, with chemical shifts being assigned to the nearest neighbors. A nonlinear regression fit of the chemical changes as a function of ligand concentration was used to calculate the dissociation constant for the syntenin-1 PDZ12-CD63C complex (2). The combined backbone 1H and 15N chemical shift changes, 
, were calculated according to equation 1, where
N is the 15N chemical shift difference in Hz, and
H is the 1H chemical shift difference in Hz, between free and peptide (eightfold excess) titrated protein:
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Immunofluorescence staining. Cells were grown on glass coverslips in complete media for 24 to 36 h. Spread cells were fixed with 2% paraformaldehyde-PBS for 10 to 15 min. The staining with primary and fluorochrome-conjugated secondary Abs was carried out as previously described (6). The staining was analyzed using a Nikon Eclipse E600 microscope. Images were acquired using a Leica DC200 digital camera and subsequently processed using the DC200 image processing program.
Antibody uptake/pulse-chase. HeLa cells grown on the glass coverslips were transfected with the plasmids encoding various HA-tagged syntenin-1 constructs. After 48 h posttransfection, cells were incubated with 10 µg/ml MAb 6H1 in serum-free DMEM (supplemented with 10 mM HEPES) for 1 h at 4°C. Cells were rinsed three times with ice-cold DMEM (zero time point) and then transferred to prewarmed complete growth media at 37°C for different lengths of time (30 min to 4 h). At each time point, a set of coverslips was taken out of the incubator and cells were immediately fixed for 20 min with 2% paraformaldehyde at room temperature. Cells were subsequently permeabilized in 0.1% Triton X-100. Cells were then rinsed in PBS and blocked for 1 h with blocking buffer (20% heat-inactivated normal goat serum-2% human serum-PBS). After blocking, cells were incubated with Alexa-conjugated goat anti-mouse Ab (1:1,000 in blocking buffer) for 1 h at room temperature. Finally, cells were rinsed in PBS and water. Coverslips were subsequently processed for analysis as described above. The internalization was scored as blocked/impaired when MAb clearly outlined cell perimeter. At least three independent experiments were performed for an individual construct with at least 70 to 80 syntenin-1-positive cells scored in each of the experiments.
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FIG. 1. Syntenin-1 is associated with the tetraspanin-enriched microdomains. MDA-MB-231 cells were lysed in the buffer containing either 0.8% Brij-0.2% Triton X-100 (A) or 0.5% Brij-0.5% Triton X-100 (B). Protein complexes were immunoprecipitated with the anti-CD9 MAb Syb1 (lane 2), anti-CD63 MAb 6H1 (lane 3), or anti-CD81 MAb M38 (lane 4). An irrelevant MAb (3E1) was used as a negative control (lane 1). The protein lysate (lane 5) was used as a positive control. Immunocomplexes were separated in 12% SDS-PAGE and transferred to nitrocellulose membranes. Membranes were developed with the polyclonal Abs to syntenin-1, the 3 integrin subunit, or MAbs to CD9 (C9-BB), CD81 (JS-64), or CD63 (1B5). WB, Western blot.
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FIG. 2. The C-terminal cytoplasmic region mediates the interaction of CD63 with syntenin-1. (A) 293T cells were transiently transfected with the plasmids encoding syntenin-1-HA (or syntenin-2-HA) and 48 h later lysed in 0.8% Brij-0.2% Triton X-100. Retention of syntenins by immobilized tetraspanin peptides was analyzed by Western blotting (WB). (B) Interaction of biotinylated peptides (0.25 µg) with the immobilized GST-syntenin-1 (or GST) was analyzed by ELISA as described in Materials and Methods. (C) CHO cells were transiently transfected with the plasmids encoding syntenin-1-HA and human CD63 (CD63h) constructs. After 48 h, cells were lysed in 0.8% Brij-0.2% Triton X-100. Protein complexes were immunoprecipitated (IP) with the anti-CD63 MAb (6H1) or an irrelevant MAb (3E1). The protein lysates (lanes 1 and 4) were used as positive controls. Immunocomplexes were separated in 12% SDS-PAGE and transferred on nitrocellulose membranes. Membranes were probed with the anti-HA polyclonal Abs or anti-CD63 MAb (1B5). wt, wild type.
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Asp and Gly210
Glu mutations in the interacting loops of PDZ1 and PDZ2, respectively, completely abolished these interactions (27). The interaction of the mutants with CD63-C peptide was examined by ELISA and in coimmunoprecipitation experiments with the native CD63. As shown in Fig. 3A, the mutations in both PDZ domains markedly diminished interaction of CD63-C peptide with syntenin-1. Interestingly, the mutation in PDZ1 had a more dramatic effect on this interaction. These data were in agreement with the results of the coimmunoprecipitation experiments, in which we found that mutations in either of the PDZ domains dramatically decreased the amount of syntenin-1 associated with native CD63 (Fig. 3B).
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FIG. 3. Both PDZ domains contribute to binding of CD63 with syntenin-1. (A) The interaction of biotinylated CD63 peptide (0.25 µg) with the immobilized GST-tagged syntenins was analyzed by ELISA as described in Materials and Methods. WT, wild type. (B) CHO cells were transiently transfected with the plasmids encoding human CD63 and syntenin-1-HA (or PDZ domain mutants of syntenin-1). The association between the proteins was analyzed as described in the legend to Fig. 2C. syn-PDZ1* and syn-PDZ2* indicate the Gly126 Asp and Gly210 Glu mutations in the interacting loops of PDZ1 and PDZ2, respectively.
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FIG. 4. CD63 interacts specifically with the PDZ1 domain of syntenin-1. (A) Superposition of six two-dimensional 1H-15N-HSQC spectra of uniformly 15N-labeled syntenin-1 PDZ12 (200 µM), which are color coded, according to the concentration of titrated CD63 C-terminal peptide. Shown in the insets are traces for residues exhibiting chemical shift changes greater than 40 Hz. (B) The locations of PDZ12 residues involved in binding to the C-terminal peptide of CD63, based on chemical shift perturbation, are indicated on the surface of syntenin-1 PDZ12 monomer (1N99.pdb). The residues displaying combined chemical shift changes (![]() ) greater than the mean value plus one (10 Hz) are color coded as indicated. The canonical peptide binding pocket in PDZ2 (traced from 1W9E.pdb) and a corresponding putative pocket in PDZ1 are represented within green dotted lines. The bulk of the two domains are separated by a solid line.
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FIG. 5. Codistribution of CD63 with syntenin-1. CD63 is associated with the cell surface pool of syntenin-1. (A) CD63 and syntenin-1 are colocalized at the plasma membrane and vesicular organelles. Upper panels. HeLa cells were transiently transfected with the plasmid encoding syntenin-HA and 48 h later processed for immunofluorescence staining. The MAbs 6H1 (IgG1) and F7 (IgG2a) were used to examine the distribution of CD63 and HA-tagged syntenin-1. Staining was visualized using Alexa 594-conjugated goat anti-mouse IgG1 Ab and Alexa 488-conjugated goat anti-mouse IgG2a. The scale bar represents 10 µM. The right panel represents a magnified image of the area marked with a bracket on the left image. Note, some of the syntenin-1-positive vesicular organelles are devoid of CD63. Lower panels. Transfected HeLa cells were processed for immunofluorescence staining as described above except that they were preincubated with the anti-CD63 MAb for 1 h at 4°C prior to fixation and permeabilization. (B) CHO cells were transiently transfected with the plasmids encoding syntenin-HA and human CD63 and 48 h later were preincubated with the anti-CD63 MAb for 1 h at 4°C. After removal of unbound MAb, the association between CD63 and syntenin-1 was analyzed as described in the legend to Fig. 2C.
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60% of the total pool of cellular syntenin-1 is associated with the surface-exposed CD63 (Fig. 5B, lower panel). These data suggest that the CD63-syntenin-1 complex is abundant at the cell surface.
It has previously been reported that deletion of the first 101 amino acids shifts equilibrium of the cellular distribution of syntenin-1 towards the plasma membrane (44). Hence, one might expect that deletion of the sequence N-terminal to PDZ1 would enhance the interaction between syntenin-1 and CD63. However, the immunoprecipitation experiments showed that the enhanced recruitment of the syntenin-1
N mutant (with 100 N-terminal amino acids deleted) to the plasma membrane did not result in the stoichiometric increase of its association with CD63 (Fig. 6B). On the other hand, we observed that the deletion of the last 23 amino acids following PDZ2 (syntenin-1
C mutant) obliterated its association with CD63 (Fig. 6B). Further analysis revealed that the region between the residues 281 and 293 is important for the stability of the CD63-syntenin-1 complex (Fig. 6C). Notably, the pattern of distribution of the syntenin-1
C mutant in cells was markedly different compared to that of syntenin-1 or syntenin-1
N, with less of the protein associated with the internal and plasma membranes (Fig. 6A). To examine whether the negative effect of the
C deletion on this association is due to the redistribution of the syntenin-1
C mutant in cells, we carried out pull-down experiments using CD63-C peptide. As illustrated in Fig. 6D, the syntenin-1
C mutant could not be retained by the immobilized peptide. Finally, ELISA experiments also showed that the direct binding of CD63-C peptide to purified syntenin-1
C is significantly weaker than that of the wild-type protein (Fig. 6E). These data strongly suggest that the C terminus is directly involved in stabilizing the association of syntenin-1 with CD63.
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FIG.6. The C-terminal part of syntenin-1 stabilizes its association with CD63. (A) Distribution of deletion mutants of syntenin-1. HeLa cells were transiently transfected with the plasmids encoding syntenin-1 C-HA or syntenin-1 N-HA and 48 h later processed for immunofluorescence staining. The MAbs 6H1 (IgG1) and F7 (IgG2a) were used to examine the distribution of CD63 and HA-tagged syntenin-1. Staining was visualized using Alexa 594-conjugated goat anti-mouse IgG1 Ab and Alexa 488-conjugated goat anti-mouse IgG2a. The scale bar represents 10 µM. (B and C) Cos7 cells were transiently transfected with the plasmids encoding various HA-tagged syntenin-1 constructs and human CD63. After 48 h, cells were lysed in 0.5% Brij-0.5% Triton X-100. Protein complexes were immunoprecipitated (IP) with the anti-CD63 MAb (6H1) or an irrelevant MAb (3E1). The protein lysates (lanes 1 to 3 in panel B and lanes 1 to 5 in panel C) were used as positive controls. Immunocomplexes were separated in 11 SDS-PAGE and transferred on nitrocellulose membranes. Membranes were probed with the anti-HA polyclonal Abs or anti-CD63 MAb (1B5). (D) 293T cells were transiently transfected with the plasmids encoding syntenin-1-HA and syntenin-1 C-HA and 48 h later lysed in 0.5% Brij-0.5% Triton X-100. Retention of syntenins by immobilized CD63-C peptides was analyzed by Western blotting (WB) with the anti-HA polyclonal Abs. (E). Interaction of biotinylated CD63-C peptide (0.25 µg) with the immobilized GST-tagged syntenins was analyzed by ELISA as described in Materials and Methods. wt, wild type.
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FIG. 7. Elevated expression of NF-2/merlin does not interfere with the assembly of the CD63-syntenin-1 complex. Cos7 cells were transiently transfected with the plasmid encoding syntenin-1-myc (0.5 µg) and indicated amounts of the plasmid encoding Flag-tagged human NF-2/merlin. After 48 h, cells were lysed in 0.5% Brij-0.5% Triton X-100. Protein complexes were immunoprecipitated (IP) with the anti-CD63 MAb (6H1). The protein lysates (lanes 1 to 3) were used as positive controls. Immunocomplexes were separated in 11 to 12% SDS-PAGE and transferred on nitrocellulose membranes. Membranes were probed with the anti-myc and anti-Flag polyclonal Abs or anti-CD63 MAb (1B5). WB, Western blot.
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16% of the syntenin-1-expressing cells compared to 100% in the nontransfected cells. As shown in Fig. 8, the differences were also apparent at the later time points:
37% and
60% of the anti-CD63 MAbs were internalized after cells were incubated at 37°C for one and four hours, respectively. The inhibitory effect of syntenin-1 on CD63 expression was even more pronounced in cells expressing the N-terminal deletion mutant of this protein. We did not observe any internalization of the anti-CD63 MAb even after 4 h of incubation at 37°C (Fig. 8B and D). In control experiments, we found that neither wild-type syntenin-1 nor the syntenin-1
N mutant changed the kinetics of internalization of labeled transferrin (Fig. 8C). Taken together, these results show that syntenin-1 plays an important role in the regulation of constitutive endocytosis of CD63.
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FIG.8. Syntenin-1 regulates internalization of CD63. HeLa cells were transiently transfected with the plasmids encoding HA-tagged variants of syntenin-1 (A to C). Forty-eight hours later, cells were surface labeled with the anti-CD63 MAb (A and B) or Texas Red-labeled transferrin (Tf-TexRed) (C) for 1 h at 4°C and then placed to 37°C for indicated time intervals. Cells were subsequently processed for the immunofluorescence staining as described in the legend for Fig. 5A, upper panels. Arrowheads point to cells expressing syntenin-1 constructs. Note the distinct peripheral staining with anti-CD63 MAb. The scale bar represents 10 µM. (D) Quantitative analysis of three independent internalization experiments with 70 to 80 transfected cells counted in each experiment. Shown are the results of the experiments with cells expressing wild-type (wt) syntenin-1. Expression of the syntenin-1 N mutant completely blocked internalization of the anti-CD63 MAb. Error bars represent standard errors of the means.
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The two PDZ domains of syntenin-1 are known to bind to a variety of target proteins by employing their degenerate specificities and cooperative interactions (8, 16, 23, 24). For the first time we have identified a protein that preferentially targets the PDZ1 domain of syntenin-1 within the PDZ tandem. Although it was recently reported that the C-terminal peptide of NF-2/merlin can bind preferentially to the isolated recombinant PDZ1 domain (but not PDZ2) in biochemical assays (24), the structural basis of this interaction has not been studied. We noticed that the C-terminal NF-2 peptide (VAFFEEL) used in this study has a pronounced negative potential, and may, therefore, bind to the positively charged PDZ1 of syntenin-1 in an electrostatic manner. A canonical mode of peptide binding, observed in a number of PDZ domain-containing proteins, assumes that the bound peptides adopt a regular secondary structure in the form of an additional antiparallel strand between the helix
2 and the adjoining strand ß2 of the PDZ domains (10). However, recent reports describe noncanonical modes of peptide binding to PDZ domains of NHERF, X11/Mint, and syntenin-1 (16, 25, 31) where peptide binding occurs without the formation of a regular ß strand. In the case of syntenin-1, the noncanonical mode of binding with a synthetic peptide is facilitated by structural differences within PDZ1. These differences include an unusually narrow peptide binding groove compared to that of PDZ2 (Fig. 4B) and a hydrogen bond between a side chain of His175 with the backbone amide of Leu129 (16), both of which prevent a peptide from pairing in a canonical ß-strand conformation.
In the context of the syntenin-1 structures (16), our NMR experiments with the CD63 C-terminal peptide are consistent with a noncanonical mode of binding to the syntenin-1 PDZ1 domain. That is, the chemical shift perturbations were localized to the residues in the vicinity of the carboxylate binding loop, with no significant perturbations in residues corresponding to those of canonical peptide binding grooves (Leu129, Lys130, His175, and His171 on ß2 and
2). Notably, we also observed slight chemical shift changes in the PDZ2 domain upon titration with the CD63-C peptide. Furthermore, G210D mutation in PDZ2 had a negative effect on the interaction between CD63 and syntenin-1 (Fig. 3). Importantly, NMR analysis of the G210D mutant of syntenin-1 PDZ12 indicates that there are no major conformational changes in the structure of the protein, with the chemical shift perturbations being primarily confined to the vicinity of the mutation. However, we also observed subtle chemical shift changes in the carboxylate binding groove of PDZ1 domain (results not shown). Taken together, these data suggest that there may be a weak allosteric interaction between the PDZ domains of syntenin-1.
While the engagement of PDZ domains is essential for most interactions involving syntenin-1, our data illustrate for the first time the importance of the C-terminal 12 amino acids in the PDZ domain-dependent interactions. There are two possibilities that may explain how the region outside the PDZ domains can control the interaction involving syntenin-1. Firstly, we found that the amount of syntenin-1
C at the plasma membrane is markedly decreased compared to that of the wild-type protein. Thus, the impaired recruitment of the mutant to the plasma membrane could shift a stoichiometric balance between CD63 and syntenin-1 and prevent interaction between the proteins in cells. Secondly, our pull-down and ELISA experiments clearly indicate that deletion of the C-terminal region also affects a direct contact between the proteins. These data suggest that the 281-to-293 region is involved in allosteric regulation of the association between syntenin-1 and CD63. For example, it may have a direct stabilizing effect on binding of the cytoplasmic tail of CD63 to PDZ1 (see above).
While the interactions of class I ligands (Ser/Thr-X-
, where
represents a C-terminal hydrophobic residue) with PDZ domains can be influenced by ligand phosphorylation (1, 41), the regulatory mechanisms that control the associations involving class II (
-X-
) and noncanonical ligands remain unknown. One possibility would be that those interactions are controlled by a direct competition between various ligands for a given PDZ domain-containing protein. This mode of regulation would rely on the events that modulate the local concentrations of the alternative ligands. Previous studies have suggested that the C terminus of merlin can also bind the syntenin-1 PDZ1 domain with relatively high affinity (21, 24), and weak interactions with syndecan and neurexin have also been described (16). Thus, it is conceivable that fluctuations in the expression of alternative ligands may influence the association of CD63 with syntenin-1. However, our results indicate that elevated expression of merlin in cells does not influence the formation of the CD63-syntenin-1 complex. These data suggest that either these complexes are spatially separated in cells or the affinity of CD63 tail to syntenin-1 is higher than that of NF-2/merlin. It was also reported that PDZ1 of syntenin-1 binds PI(4,5)P2 (43). Although the structural basis of this interaction is unclear, mutational analysis suggests involvement of residues Lys119, Ser171, Asp172, and Lys173 (43). Our NMR results of the CD63-C interaction show a slight chemical shift change only for Lys119, thus suggesting that the proposed PI(4,5)P2 interaction would not exclude CD63 binding. Accordingly, we found overexpression of various isoforms of PIP5-K [enzymes responsible for conversion of PI(4)P into PI(4,5)P2] does not have an effect on the interaction of CD63 with syntenin-1 (results are not shown).
The tyrosine-based sorting signal at the C terminus of CD63, G-Y-E-V-M, interacts with µ2 and µ3 subunits of the AP-2 and AP-3 adaptor complexes (34). Crystal structures of µ2 with the peptides containing the Y-X-X-
sorting signal reveal that both tyrosine and the bulky hydrophobic amino acid at theY + 3 position are engaged in binding to the surface of two parallel ß-sheet strands of the adaptor subunit (32, 35). In contrast, both classical and noncanonical modes of interaction of PDZ domains with their ligands require positioning of the last two amino acids of the peptide into the interactive groove (16). Hence, it is highly likely that the interactions of CD63 with syntenin-1 and µ subunits of AP complexes are mutually exclusive. Consequently, one would expect syntenin-1 to influence the AP-2/AP-3-dependent trafficking of CD63. Although modulation of syntenin-1 (i.e., overexpression or knocking down with siRNA) does not have an obvious effect on the steady-state distribution of CD63 in HeLa cells (results are not shown), the rate of internalization of CD63 was decreased in cells expressing high levels of syntenin-1 (Fig. 8). Importantly, this effect is dependent on the interaction of syntenin-1 with CD63. Our data thus highlight a hitherto unknown function of syntenin-1 as a regulator of constitutive endocytosis. Given that three other transmembrane partners of syntenin-1, including ephrin-B2 (30), CD6 (15), and mGluR7a (20), have the canonical Y-X-X-
sorting signal juxtaposed to or overlapping with the PDZ binding motif, one would expect that endocytosis/trafficking of these proteins is also influenced by syntenin-1 interactions.
Although the most plausible model suggests that syntenin-1 would function as a "molecular plug" that physically precludes the binding of AP-2 and AP-3 complexes to the cytoplasmic tail of CD63, one cannot exclude that the effect of syntenin-1 on endocytosis is due to modification rather than suppression of the internalization pathway. In fact, a decrease in the internalization rate (but not a complete block of the process) may indicate that syntenin-1 diverts endocytosis from the fast, AP-2-dependent to a slow, AP-2-independent route. This pathway(s) may involve the N-terminal 100 amino acids of syntenin-1, deletion of which completely blocked antibody-induced internalization of CD63 but had no effect on the formation of the CD63-syntenin-1 complex. Notably, the existence of an AP-independent sorting pathway for the proteins containing the G-Y-X-X-
motif has been predicted in a recent work by Janvier and Bonifacino (22).
In summary, this report describes syntenin-1 as a new component of tetraspanin microdomains and identifies CD63 as one of its specific targets. Importantly, we demonstrated the functional relevance of this association. As growing evidence strongly suggests that tetraspanins are involved in regulating the membrane dynamics of their transmembrane partners, the association with syntenin-1 may represent a key determinant of this activity.
This work was supported by CR UK grants C1322/A2945 and C1322/A5705 (to F.B.), the BBSRC grant 2003:574 (to N.A.H. and F.B.), and grants from the BBSRC (10714) and Wellcome Trust (071684) (to M.O.).
Published ahead of print on 14 August 2006. ![]()
¶ These authors equally contributed to this work. ![]()
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