Section of Molecular Genetics and Microbiology and Institute of Cell and Molecular Biology, University of Texas at Austin, Austin, Texas
Received 7 November 2005/ Returned for modification 8 December 2005/ Accepted 21 December 2005
| ABSTRACT |
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| INTRODUCTION |
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Bright is a transcription factor discovered for its ability to bind certain immunoglobulin heavy-chain (IgH) promoters and the intronic enhancer following treatment with mitogens or growth factors (reviewed in reference 41). Stimulation of a mature B-cell line, BCL1, with interleukin-5 and antigen was shown to increase IgH gene transcription and to induce the formation of a nuclear matrix association region (MAR)-dependent DNA binding complex (38). A protein required for this complex was identified and named B-cell regulator of IgH gene transcription, Bright (16). As with other MAR binding proteins, Bright binds to ATC-rich sequences within MARs and, as such, became the founding member of the 15-membered (in humans and mice) ARID (AT-Rich Interacting Domain) family (reviewed in reference 42). However, while most ARID members bind AT-rich DNA relatively nonspecifically (28), Bright and its other ARID3 paralogue, Bright Dri-like protein (Bdp), show highly restricted specificity for an extended ATC-rich consensus found in promoter-associated MARs of some but not all variable region (VH) gene segments (13, 16) and within the MARs flanking the intronic enhancer (16). This specificity is engendered, at least in part, by the ability of ARID3 proteins to homo-oligomerize through a region conserved only in ARID3 termed the REKLES domain (reviewed in reference 41).
Mitogen- or growth factor-induced Bright-VH-associated MAR complexes were demonstrated to contain Bruton's tyrosine kinase (Btk) (40). Btk is required for efficient antigen receptor-mediated signaling during B lineage development and activation. Its loss or mutation leads to a lethal X-linked immunodeficiency condition in humans (25). MAR binding and transactivation by Bright are enhanced in the presence of Btk, raising the possibility that Bright might function in B-cell receptor-mediated signaling (31, 40). An evolutionarily conserved role for Bright in signal transduction is further supported by recent findings for Xenopus. The frog orthologue of Bright is essential for the signaling cascade activated by transforming growth factor ß, which is required for mesodermal patterning and embryonic morphogenesis (7).
In addition to its participation in IgH transcriptional regulation, Bright and its human orthologue, Dril1, appear to function in cell cycle regulation. This was initially suggested by our finding (49) that a fraction of nuclear Bright, by virtue of an interaction through its REKLES domain with Sp100, fractionated into promyelocytic leukemia nuclear bodies (PML-NBs). Subsequently, it was found that when expressed ectopically in primary mouse embryonic fibroblasts (MEFs), Bright or Dril1 can rescue natural senescence or oncogenic RASV12-induced senescence in a p53-independent fashion (29). Furthermore, Dril1 can immortalize and transform MEFs through the regulation of cyclin E1 and, subsequently, E2F1 activity (29). While the mechanism underlying this G1/S acceleration remains unclear, a previous and unrelated report argued that Dril1 could physically interact with E2F1, leading to the alternative name, E2F1-binding protein 1 (35). Recently, it was reported that ectopic overexpression of Dril1 induced desumoylation of PML and the disintegration of PML-NBs, whereas reduction of Dril1 expression by small interfering RNA led to PML-NB accumulation and, consequently, PML-mediated premature senescence (12), an effect consistent with that observed previously in primary MEFs (29).
Based on its previous characterization as a MAR binding protein which accumulated in the nuclear matrix and in nuclear matrix-associated PML-NBs, we anticipated that Bright's transcriptional activity may require regulated nuclear matrix localization (41). In this paper, we investigated the cellular residency of Bright and determined the protein domains and motifs responsible. Unexpectedly, a significant amount of Bright was detected in the cytoplasm as well as in the nucleus. We found that Bright undergoes nucleocytoplasmic shuttling, and this appears to be regulated by a CRM1-dependent nuclear export mechanism. We show that shuttling occurs during S phase of the cell cycle and may be required for maintaining adequate Bright levels in the nucleus. However, this is insufficient for maximal transcription, as a nonshuttling, nucleus-only point mutant is a weaker transactivator than shuttle-competent wild-type Bright.
| MATERIALS AND METHODS |
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Non-B cells were transiently transfected using FuGene6 transfection reagent (Roche Diagnostics) following the manufacturer's directions. Briefly, 1.5 x 105 to 3 x 105 cells were cultured overnight in six-well plates containing 2 ml medium. The cells were transfected with 0.3 to 1 µg of plasmid DNA and cultured for 24 to 48 h. For cotransfection, we equalized the total DNA amounts by adding the appropriate amount of pCR3.1 empty circular vector. For LMB experiments, 10 ng/ml of LMB (provided by Minoru Yoshida, University of Tokyo, Japan) was added directly to the culture medium 12 h after transient transfection. Then, the cells were cultured for an additional 12 h and analyzed for Bright localization.
To synchronize the cell cycle at G1/S phase, BCL1 cells were grown in RPMI medium supplemented with 0.5% FCS for 18 h and then shifted to RPMI medium supplemented with 10% FCS and 1 mg/ml of aphidicolin (Sigma) for 16 h. The cells were washed with phosphate-buffered saline (PBS) to remove the cell cycle inhibitor and grown in RPMI medium supplemented 10% FCS.
Plasmids. N-terminal green fluorescent protein (GFP) fusions of Bright and Bright truncation and point mutants were engineered as follows. First, we ligated the GFP open reading frame and the multicloning site-containing 0.8-kb BclI-NheI fragment of pEGFP-c1 (Clontech) to the 4.9-kb XbaI-NheI backbone fragment of pCR3.1 (Invitrogen). The vector (pCG) contains a cytomegalovirus promoter and a T7 promoter upstream of the GFP open reading frame and stop codons for each of the three reading frames at the end of the multicloning site. Bright wild type and deletion mutants were prepared by PCR and/or enzyme digestions and inserted into pCG. Bright point mutations were introduced by PCR-based site-directed mutagenesis. Bright wild type (1-601) and point mutants, K466A and G532A, were subcloned by PCR into pBabe, a murine leukemia virus-based puromycin-selectable retrovirus (provided by Daniel Peeper, Netherlands Cancer Research Institute) (10) for transduction of NIH 3T3 cells.
For the pGL3 5' MAR construction, a fragment spanning the two MAR binding sites of Bright (previously termed Bf150 and Tx125) (39) that reside upstream of the S107 family member VH1 IgH promoter was PCR amplified using primers S107-5 (5'-GGATCCACATGTATGATTTTAATG-3') and TxR5-3 (5'-AGATCTCAGCTATCAGTAACAATG-3') from an S107-bearing construct used previously (21). The fragment contains the 5' MARs but not the 125-bp core promoter of the VH1 gene, eliminating the octamer, ocaB, and TATA box binding sites (3). The 5' MAR-containing fragment was inserted upstream of the minimal SV40 promoter of pGL3-promoter (Promega) and confirmed by DNA sequencing.
A neo mini construct, OSneo, was constructed by digesting OSDUPDEL with EcoRV and XhoI and by religating the 3.5-kb fragment. pcDNA hnRNP A1 (44) and pcDNA hnRNP C1 (44) were obtained from Karen J. Artzt (University of Texas at Austin). An expression plasmid encoding the human CRM1 full-length cDNA (hCRM1) was obtained from Tom Hope (University of Illinois at Chicago).
Retroviral transduction. The Phoenix retroviral system was employed to establish stable transductants of Bright wild type and localization point mutants in NIH 3T3 cells according to published protocols (http://www.stanford.edu/group/nolan/retroviral_systems/phx.html). Briefly, 3 x 105 amphitrophic Phoenix 293 packaging cells were plated in 4 ml of DMEM supplemented with 10% fetal bovine serum (FBS) in 60-mm plates. After 12 h, the medium was replaced with fresh medium containing 25 µM chloroquine and cultured for 24 h. The Phoenix cells were transfected with pBabe, pBabe-Bright, or pBabe-Bright mutants with FuGene6. At 8 h posttransfection, the medium was replaced with medium lacking chloroquine. At 48 h after transfection, the viral supernatant was harvested, centrifuged, and filtered to remove live cells and debris. NIH 3T3 cells were plated 24 h before viral infection. Culture medium was replaced with the viral mixture (1 ml of viral supernatant, 4 µM of polybrene, and 2 ml of DMEM). After 3 h, 7 ml of DMEM medium supplemented with 10% FBS was added. Stable-expressing Bright cells were selected with 2 µg/ml of puromycin from day 2 posttransfection.
Protein fractionation. We prepared the cytoplasmic and nuclear extract according to the procedure of Johnson et al. (19). Cells (1 x 106) were collected and washed twice with PBS. The cell pellet was suspended in 100 µl of sucrose buffer I-A (100 mM Tris-Cl [pH 8.0], 0.32 M sucrose, 3 mM CaCl2, 2 mM magnesium acetate, 0.1 mM EDTA, 1 mM dithiothreitol, and 0.5% NP-40) supplemented with protease inhibitors. Then, the nuclei were separated from the soluble cytoplasmic fraction by centrifugation at 2,000 rpm for 2 min (model 59-A; Fisher Scientific) at 4°C. The cytoplasmic fraction was recentrifuged at 13,000 rpm for 15 min at 4°C (5417R; Eppendorf). The supernatant was used as the cytoplasmic fraction. The nuclei were washed with 1 ml of sucrose buffer I-B (100 mM Tris-Cl [pH 8.0], 0.32 M sucrose, 3 mM CaCl2, 2 mM magnesium acetate, 0.1 mM EDTA, 1 mM dithiothreitol, and 0.5 mM phenylmethylsulfonyl fluoride) and spun down at 2,000 rpm for 2 min. The nuclei were suspended in 100 µl of urea buffer (8 M urea, 10 mM Tris-Cl [pH 8.0]), sonicated briefly at a low power to shear chromosomal DNA, and centrifuged at 13,000 rpm for 15 min at 4°C (5417R; Eppendorf). The supernatant was used for the nuclear extract. After determining the protein concentration using the Bradford assay (6a), 2 to 20 µg of each extract was loaded for Western blot analysis. The density of each band was measured using Scion Image 1.63 (Scion Corporation) after subtraction of the average backgrounds (10 random measurements).
Whole-cell lysates were prepared through protein extraction in 8 M urea buffer, brief sonication, and centrifugation at 13,000 rpm for 15 min.
Cytological studies. Indirect immunofluorescence analysis was performed to examine the localization of Bright. B cells (1 x 106) were collected and washed twice with PBS. The cells were fixed with 500 µl of 4% paraformaldehyde (PFA) for 20 min at 25°C and permeabilized with 0.1% of Triton X-100 in PBS for 15 min at 25°C. After being washed with PBS three times, the cells were attached onto slides (Polytech) coated with 1% poly-L-lysine (Sigma), and the slides were immersed first in ice-cold methanol for 5 min and then in ice-cold acetone for 30 s. The cells were blocked with 20% FBS in PBS for 15 min at 25°C and incubated with rabbit anti-Bright antiserum (diluted 1:800) and/or goat anti-lamin B antibody (diluted 1:500; Santa Cruz) for 1 h at 25°C. After a washing, the cells were stained with donkey rhodamine-conjugated anti-goat antibody (diluted 1:500; Santa Cruz) and/or donkey fluorescein isothiocyanate-conjugated anti-rabbit antibody (diluted 1:500; Santa Cruz) for 1 h at 25°C in the dark. After being washed with PBS, the cells were stained with 1 ng/ml DAPI (4',6'-diamidino-2-phenylindole) or Hoechst 33342 for 5 min at 25°C and then washed again with PBS. Slides were air dried, mounted with mounting medium (VECTASHIELD H-1000; Vector Laboratories, Inc.), covered with coverslips, and sealed with nail polish. The localization of Bright was observed via an Axioskop fluorescence microscope (Zeiss).
GFP-transfected Cos-7 cells were grown on coverslips for 24 h and fixed with 4% PFA for 20 min at 25°C. After being washed with PBS, coverslips were air dried, mounted with mounting medium supplemented with 1 ng/ml of DAPI, and covered with slide glasses. GFP or GFP-Bright localization was examined with Axioskop fluorescence microscopy (Zeiss). For each experiment, a minimum of 300 GFP-positive cells were grouped into three categories according to where the majority of the signal localized and scored as preferential nuclear localization (N), nuclear and cytoplasmic localization (W), or preferential cytoplasmic localization (C). The percentage of cells within each group was calculated for each transfection, and the average percentage was obtained from at least three independent transfections.
Heterokaryon fusions. We performed heterokaryon experiments following the method of Blanc et al. (5). Briefly, we grew 3 x 105 HeLa cells/well in a six-well plate overnight. Then, we transfected the HeLa cells with 1 µg of myc-Bright, myc-Bright G532A, myc-hnRNP A1, or myc-hnRNP C1. On day 2, we replated 3 x 105 transfected cells onto sterilized cover glasses and cultured the cells overnight. On the following day, 3 x 105 NIH 3T3 cells were plated onto the HeLa cells and grown for 3 h with 10 µg/ml of cycloheximide. Cells were fused in 50% polyethylene glycol 3350 for 2 min, washed with 2 ml of PBS three times, and then grown with 10 µg/ml of cycloheximide for 3 h. After the cells were washed with PBS, they were immunostained with mouse anti-myc antibody (diluted 1:1,000) (BAbCO) as described above.
Cell cycle analysis. B cells were fixed in ethanol, washed with PBS, incubated for 30 min with 10 µl of 50 µg/ml propidium iodide (Sigma) and 10 µl of 10 mg/ml RNase A, and then analyzed by flow cytometry for DNA content. Cos-7 cells transiently transfected with GFP-Bright were fixed in 4% PFA and then stained and analyzed as above.
Luciferase assays. To establish a 5' MAR luciferase-expressing NIH 3T3 stable cell line (NIH 3T3 5' MAR-Luc), NIH 3T3 cells were cotransfected with OSneo, a neomycin-resistant gene-bearing mini vector, and the pGL3-5' MAR construct. NeoR clones were selected with 600 µg/ml of G418 for 12 days, and then luciferase-positive clones were obtained. NIH 3T3 5' MAR-Luc cells were transduced with pBabe-Bright wild type or K466A or G532A point mutant, and puromycin-resistant pools were used for further experiments. NIH 3T3 5' MAR-Luc cells expressing Bright wild type or mutants were plated at 4 x 104 cells per well in 24-well plates. Twelve or 24 h later, the luciferase activity was measured within 10 µg of whole-cell lysate using the luciferase reporter assay system (Promega) according to the manufacturer's instructions. To evaluate the effect of Bright on luciferase reporter gene activity, we calculated the relative luciferase activities of Bright-expressing cells compared with that of NIH 3T3 5' MAR-Luc. The relative activities were obtained as averages from four independent experiments.
Statistical analyses were performed using an unpaired Student t test (http://graphpad.com/quickcalcs/index.cfm). A P value of <0.05 was considered to be significant.
Northern blotting. Total RNA was isolated using Trizol (Invitrogen), and 5 µg was separated on 0.8% agarose-formaldehyde gels. Probes for glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (316-bp EcoRI-BamHI fragment of pTRI-GAPDH-human; Ambion) and for Bright (bases 1443 to 2067; GenBank U60335) were prepared using the Megaprime DNA labeling system (Amersham).
| RESULTS |
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Even though Bright is preferentially expressed in B lymphocytes in the adult mouse, it is expressed quite broadly in the developing embryo (41). Also, B cells pose strong technical limitations (e.g., extremely small cytoplasmic volume relative to nuclear volume and low transfection efficiency) for detailed structure-function analyses. Therefore, it was necessary to determine whether ectopic expression of Bright in more suitable non-B-cell lines or primary cells would mimic the localization phenotype seen in B cells. So, we expressed full-length Bright (residues 1 to 601) as an N-terminal GFP fusion protein (GFP-Bright) in the monkey kidney cell line, Cos-7. At 24 h posttransfection, the cellular localization of Bright was observed by fluorescence microscopy (Fig. 1D and E). As with B cells, three phenotypes were observed: accumulation in both the nucleus and the cytoplasm, preferentially within the nucleus, or preferentially within the cytoplasm. As expected, the GFP-only control was evenly distributed across the entire cell without any preferential localization. To address potential construct artifacts, we fused GFP to the C terminus of Bright (Bright-GFP) and observed a similar localization pattern (data not shown). Bright-GFP localized preferentially (
65% of transfected cells) within the nucleus, with the other two phenotypes represented as smaller percentages. These phenotypes were observed regardless of the recipient transfected cell (e.g., NIH 3T3 in Fig. 1E and HeLa, data not shown), with preferential nuclear expression dominating.
To address potential artifacts of GFP fusion and cytomegalovirus promoter-mediated overexpression, we produced stably expressing Bright cell lines in NIH 3T3 cells (NIH 3T3-Bright) by retroviral infection of the full-length, untagged wild-type protein. Localization of Bright was detected by immunostaining using anti-Bright antiserum (Fig. 1F). About 70% of the cells expressed Bright in the nucleus, while Bright was distributed across the entire cell or restricted to the cytoplasm in
30% of cells.
Because the cell lines used for ectopic expression were either immortal (NIH 3T3) or transformed (HeLa and Cos-7), we could not exclude their malignant features (e.g., aneuploidy and deregulated growth) as important for the asymmetric nucleocytoplasmic localization of Bright. Therefore, we transiently transfected E13.5 MEFs with GFP-Bright or GFP only and examined their localization (data not shown). While GFP diffused across the whole cell, GFP-Bright localized in the nucleus and/or in the cytoplasm.
We conclude that regardless of whether measurements are performed on the endogenous or ectopically introduced protein, whether GFP tagged or wild type, and whether in primary or transformed cells, Bright localization is observed in both the nucleus and the cytoplasm in various ratios in asynchronously growing cells. This indicates that the factors required for asymmetric nucleocytoplasmic distribution of Bright are ubiquitous and that a transformed non-B-cell line such as Cos-7 provides an adequate model for further study.
Bright is exported from the nucleus to the cytoplasm under CRM1 control. Because Bright localizations appeared to differ in individual cells in an asynchronous culture and a few cells expressed Bright exclusively in the cytoplasm, we reasoned that Bright might be translocated during cell growth by an active export system. We tested whether LMB, a specific and potent inhibitor of CRM1/exportin 1, blocks the nuclear export of GFP-Bright. The addition of LMB at concentrations (10 ng/ml) not toxic to cell growth (data not shown) resulted in the nuclear accumulation of GFP-Bright in Cos-7 cells while ethanol (solvent in which LMB is dissolved) had no effect (Fig. 2A). Ethanol or LMB treatment had no effect on GFP-only localization, indicating that the cytoplasmic export of Bright requires a functional CRM1. Cos-7 cells transiently cotransfected with CRM1 and GFP-Bright (Fig. 2B) significantly increased their cytoplasmic localization of GFP-Bright, while neither GFP alone nor mock transfections showed such effects. Therefore, Bright is actively exported from the nucleus to the cytoplasm by CRM1.
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subdomain of Bright.
As a first approach toward identification of the NLS for Bright, we constructed C-terminally truncated GFP-Bright mutants and analyzed their localization into Cos-7 cells at 24 h posttransfection (Fig. 3A and D). A short C-terminal truncation (residues 6 to 562) had no effect on the cellular localization of Bright (data not shown). Further truncation of the C terminus (residues 1 to 541) led to Bright accumulation within the nucleus in a significantly higher percentage of cells (
70%) than that of wild-type GFP-Bright (
32%), indicating that residues 542 to 562 are critical for cytoplasmic localization. Mutant 1-493, in which the C-terminal half of the REKLES domain was deleted, still accumulated in the nucleus of
80% of transfected cells. However, the localization of mutant 1-381, in which the entire REKLES domain was deleted, was evenly distributed across the nucleus and cytoplasm of
98% of transfected cells, i.e., the same pattern as that seen for GFP alone. This indicated that the region between residues 381 and 493 is required for NLS activity. As expected from these results, the cellular localization of mutant 1-269 was also evenly distributed within all cells (data not shown). Because the 1-381 and 1-269 mutants had no preferential localization within either the nucleus or the cytoplasm, we suspect that their appearance in both compartments reflects unregulated diffusion through nuclear pores.
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65% of the transfected cells, but no preferentially nuclearly accumulating cells were observed. Surprisingly, the deletion of another 157 residues (mutant 395-601) restored the localization pattern of this mutant to that of wild-type Bright. Further deletion (residues 450 to 601) increased the preferential nuclear localization of Bright within
70% of transfected cells. A shorter mutant (mutant 500-601) accumulated in the cytoplasm in
40% of transfected cells. Even though
60% of mutant 500-601-transfected cells expressed the protein in both the nucleus and the cytoplasm, we were unable to detect any cells in which the 500-601 mutant accumulated exclusively in the nucleus. This indicated that the deletion within mutant 500-601 removed a functional NLS. In addition, the concomitant increase in cytoplasmic accumulation of mutant 500-601 indicated that it might be actively exported out of the nucleus. Because mutants 450-601 and 1-493 localized preferentially within the nucleus, we concluded that residues 450 to 493, the N-terminal half of the REKLES domain, are necessary for the regulated nuclear localization of Bright.
Next, we examined whether mutant 450-493 is both necessary and sufficient for NLS activity (Fig. 3A and D). Contrary to our expectation, mutant 450-493 was evenly distributed in virtually every transfected Cos-7 cell. One possible explanation for this is that residues 450 to 493, when removed from their wild-type context within the conserved REKLES domain, are insufficient to adopt an appropriate secondary conformation. To test this, we examined the localization of the entire REKLES domain in mutant 450-541, in which the C-terminal endpoint of the 450-to-493 truncation is extended by 48 amino acids. As hypothesized, mutant 450-541 accumulated preferentially in the nucleus in
87% of the transfected cells. However, extension of residues 450 to 493 in the other (N-terminal) direction (mutant 395-493) resulted in a whole-cell distribution indistinguishable from that of mutant 450-493 (data not shown).
We introduced internal deletions (Fig. 3A and D) to more precisely define the region within REKLES that is important for the nuclear localization of Bright. Deletion of the N-terminal region of the REKLES domain (mutant d453-500) led to cytoplasmic accumulation of the mutant in
85% of the transfected cells. Treatment with LMB did not induce the nuclear retention of this mutant, indicating that residues 453 to 500 are required for the nuclear entry of Bright.
The REKLES domain was named for an amino acid motif (Fig. 3B) which is relatively conserved only among ARID3 paralogues and orthologues (42). The domain has been operationally divided into N-terminal (REKLES
) and C-terminal (REKLESß) subdomains (Fig. 3A) (23). REKLES
, which was implicated directly by the results described above, contains no classical NLS-like sequences (Fig. 3B). Nevertheless, site-directed mutagenesis showed that two lysines within REKLES
were required for nuclear entry of Bright (Fig. 3B and D). Point mutation K466A or K467A abolished the nuclear localization of Bright and resulted in cytoplasmic accumulation of the protein in
86% of transfected cells. Importantly, LMB treatment could not retain K466A in the nucleus (data not shown). This strongly supported the contention that the cytoplasmic accumulation of this point mutant was caused by the abolishment of its NLS, as opposed to enhancement of its export activity. However, K457A, which alters the K within the REKLES motif itself, had no effect on the localization pattern of Bright. Mutation of the nearby P463 to A, which is also conserved in Bright homologues, abolished the nuclear import of Bright and further emphasized the importance of REKLES
for the nuclear localization of Bright.
We conclude that Bright has a functional NLS between residues 450 and 493 of its REKLES
that requires at least two noncanonical (with respect to SV40-type motifs) lysines for nuclear entry. In addition, our data raise the possibility that the remaining C terminus, the acidic domain, and even the ARID itself contribute to Bright's complex cellular localization.
Nuclear export of Bright requires the REKLESß subdomain and the 19 amino acids downstream. Because the loss of the REKLESß domain in mutant 1-493 resulted in nuclear accumulation and because the C-terminal region of Bright (mutant 500-601) was sufficient for cytoplasmic accumulation, we suspected that the nuclear export signal(s) might reside in the C-terminal region of Bright. To test this, we transiently transfected Cos-7 cells with truncation mutants that localize to the cytoplasm (Fig. 3A and D). At 12 h posttransfection, we treated the cells with 10 ng/ml LMB for 12 h and then observed the localization of the mutant proteins (Fig. 3A). GFP localized across the entire cell irrespective of LMB treatment. While LMB had no effect on mutant 1-381, the nuclear accumulation of mutant 395-601 was significantly increased. LMB also enhanced the nuclear appearance of mutant 500-601, while this small, NLS-deficient protein was preferentially detected in the cytoplasm with ethanol treatment. Likewise, a similar phenotype for the even shorter 500-to-562 truncation can be rationalized in the same manner, implying that the amino acids from residues 500 to 562 were sufficient for NES.
The 63 residues comprising the REKLESß subdomain (residues 500 to 562) do not encode a canonical leucine repeat-type nuclear export signal (Fig. 3C and data not shown). So, we constructed a series of internal deletions (Fig. 3A and D). The deletion from 521 to 541 (mutant d521-541) accumulated in the nucleus in
86% of transfected cells, while mutant d500-521 localized indistinguishably from wild-type Bright in the cytoplasm and/or in the nucleus. Because mutant d521-541 retains functional NLS activity, its nuclear accumulation in most transfected cells would most likely result from the loss of its NES activity. Within this region, all Bright homologues have conserved a cluster of residues: G532, Y535, G537, and L539. A single point mutation of any of these residues to alanine abolished nuclear export activity, i.e., resulted in the nuclear accumulation of the mutants (Fig. 3C and D). However, the conservative substitution Y535F had no effect on Bright localization, indicating that the planar conformationnot the chargeof this residue is crucial for the nuclear export activity of Bright.
We conclude that Bright is actively exported through CRM1-dependent interactions mediated by the REKLESß subdomain. We further suggest that the variable nuclear and cytoplasmic phenotypes observed for the endogenous protein or the ectopic protein observed early (24 h) following transient transfection are a consequence of alteration of the relative efficiencies of Bright's nuclear import and export activities.
Bright shuttles between the nucleus and the cytoplasm. Shuttling proteins require NLS and NES activities, but the presence of an NLS and NES does not necessarily establish shuttling ability. Therefore, we investigated whether Bright shuttles between the nucleus and the cytoplasm by performing heterokaryon fusions between murine and human derived cell lines that allow discrimination between the nuclei by Hoechst staining. We transiently transfected human HeLa cells with an N-terminal myc-tagged full-length Bright (myc-Bright) and fused the transfectants to untransfected mouse-derived NIH 3T3 cells. As controls, we employed HeLa transfections of previously characterized shuttling (myc-hnRNP A1) or nonshuttling (myc-hnRNP C1) myc-tagged constructs (44). As expected, myc-hnRNP A1 was transferred into the NIH 3T3 nuclei of the HeLa NIH 3T3 heterokaryons, while myc-hnRNP C1 was detected only in the HeLa nuclei (Fig. 4). Although the intensity of the Bright signals varied among individual heterokaryons, myc-Bright was clearly detected in NIH 3T3 nuclei. As further confirmation, we observed that the shuttling activity of the NES-incompetent G532A mutant was severely reduced (Fig. 4). These data provide formal evidence that Bright shuttles between the nucleus and the cytoplasm.
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Nuclear export and import of Bright can be modulated in serum-depleted B-cell cultures. Mitogen and growth factor stimulation have been shown to increase Bright DNA binding in normal B cells and in B-cell lines, such as M12.4 and BCL1, that are responsive to these inductive stimuli in culture (41). However, we found that this effect results from increased overall expression of Bright and not from enhancement of its nuclear/cytoplasmic ratio (data not shown). Therefore, we investigated the reverse effect of growth factor withdrawal on Bright localization. Traditional serum starvation of the B-cell lines that we employed was toxic to their growth; for example, with M12.4 cells, aberrant chromosomal nondisjunction was observed (data not shown). So, we adopted a less severe deprivation protocol in which B cells were cultured under normal conditions for 5 days without serum replenishment. Aliquots were removed from the culture periodically for subcellular fractionation and Western analysis. We observed that total Bright expression in BCL1 and M12.4 cells gradually decreased for 4 days after replenishment (Fig. 6A and data not shown for BCL1). However, Bright levels within both the nuclear and cytoplasmic fractions of BCL1 fluctuated as a function of deprivation time (Fig. 6B). Following an initial burst of nuclear import within the first 12 h, nuclear accumulation rapidly decreased to a level that was still elevated relative to that at time zero (serum addition). That this decline resulted from nuclear export is suggested by the reciprocal rise in cytoplasmic accumulation over the same (10 to 24 h) time interval. Over the next 3 days of fasting, nuclear Bright levels were maintained while cytoplasmic levels gradually declined. We observed equivalent localization behavior in fasted M12.4 B cells despite the gradual decrease of total Bright levels after replenishment (data not shown). Replenishing cells at day 5 rescued cytoplasmic expression but not at the expense of nuclear depletion (Fig. 6C). These results indicate that Bright localization is regulated in B cells under conditions in which growth factors are limiting.
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MAR-mediated transactivation by Bright is regulated by its cellular localization. Bright binds and (presumably) transactivates via IgH-associated promoter and enhancer MARs as a homo-oligomer (16). So, in order to test the impact of Bright shuttling on its transcriptional activity, we required a system in which endogenous Bright contribution was eliminated. Otherwise, heteromeric REKLES-mediated interaction of localization mutants and endogenous wild-type Bright would obscure results. Furthermore, we found previously that maximal MAR-mediated activity in B cells required chromosomally integrated reporters (21). Therefore, we appended the region spanning the two VH1 promoter-associated MAR binding sites (Fig. 8A) to the minimal SV40 promoter driving pGL3 firefly luciferase (5'MAR-Luc) (Fig. 8B) and cotransfected the construct and a neomycin mini vector, OSneo, stably into NIH 3T3 cells. Neomycin-resistant, luciferase-expressing cell lines were selected and then retrovirally transduced with either wild-type Bright, an NLS point mutant (K466A) whose expression is restricted to the cytoplasm, an NES point mutant (G532A) that accumulates exclusively in the nucleus, or the murine leukemia virus-based pBabe vector alone (Fig. 3 and 8C).
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Because both mutant proteins could self-associate and bind to the MARs (data not shown), these results indicate that the regulation of nucleocytoplasmic shuttling of Bright contributes to the control of IgH gene transcription. However, nuclear localization per se was insufficient for its transcriptional activation. It implies that Bright may have to shuttle to efficiently activate immunoglobulin promoters or that G532 may participate in unknown functions required for the transactivation activity of Bright.
| DISCUSSION |
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Our experiments with LMB treatment and CRM1 overexpression indicated that Bright is actively exported from the nucleus to the cytoplasm, resulting in its cytoplasmic appearance. In addition, heterokaryon experiments indicated that the fate of at least some Bright molecules that exit the nucleus is to shuttle back again, formally establishing a potential for regulated nucleocytoplasmic shuttling. This suggests that Bright has evolved an active nuclear export mechanism to execute a cytoplasmic function, as opposed to merely a means to down-regulate unfavorably high nuclear levels. One obvious rationale is to facilitate Bright's interaction with the cytoplasmic tyrosine kinase, Btk. Btk is essential for several phases of antigen receptor-mediated signal transduction (reviewed in reference 41), and its association with Bright enhances DNA binding and transactivation (31). Perhaps by passing through the cytoplasm, Bright might also serve as a transporter of Btk to essential nuclear phosphorylation targets, such as TFII-I (41).
There are 15 ARID family genes in humans and mice, but the REKLES domain is conserved only among the 3 ARID3 members (42). REKLES was shown to be required for the self-association of Bright and, consequently, for its in vitro MAR binding activity (16). REKLES is also required for Bright interactions with coactivators and repressors (49). Here, we show that REKLES is essential for both nuclear import and export of Bright, further extending the multifunctional nature of this domain. Even though the REKLES domain contains no classical NLS motifs, several residues (P463, K466, and K467) within the N-terminal or REKLES
subdomain were required for nuclear import. These noncanonical lysines, nonetheless, might interact directly with importins in a manner analogous to that of prototypic NLS basic residues (reviewed in reference 18).
We suspect that other domains within Bright contribute to its REKLES
-mediated NLS activity (Fig. 9A). The deletion of the acidic domain (e.g., mutant 395-601 in Fig. 2 and mutant 290-541, data not shown) abolished the nuclear accumulation of these mutant proteins and increased the cytoplasmic accumulation despite the presence of the NLS-bearing REKLES
domain. This seemed to result from abolished (or reduced) NLS activity, because LMB did not induce the nuclear accumulation of these mutant proteins. Moreover, a further deletion in mutant 395-601 restored the nuclear import activity of the mutant proteins, implying that mutant 290-394 interfered with the NLS activity of REKLES
. However, the presence of the acidic domain appeared to suppress the blocking effect exerted on the NLS by the C-terminal region of the ARID (residues 290 to 395) (data not shown). While we cannot rule out artificial effects of these deletions, the data systematically indicate that the C-terminal region of the ARID and the acidic domain contribute to the regulation of the nuclear import of Bright and, consequently, the cellular localization of Bright (Fig. 9A).
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Heterogeneous localization patterns of Bright were detected after prolonged and/or growth factor-deficient cell culture of B cells and transfected Cos-7 cells (Fig. 5 and 6). Analysis of NLS and NES mutants indicated that loss of nuclear export and not gain of nuclear import activity was crucial for this effect in Cos-7 cells. Our model to explain the various localization patterns of Bright in B cells is shown in Fig. 9B. The initial nuclear surge, followed by a cytoplasmic surge, might result from regulated nuclear export activity. We suggest that the subsequent phase of prolonged nuclear maintenance and the cytoplasmic reduction of Bright could be accomplished by the existence of a pool of nuclear Bright shielded from the shuttling machinery. A putative factor (X in Fig. 9B) might facilitate nuclear retention such that when bound to Bright, this complex remains sequestered in the nucleus. Such a retention function has been proposed previously for nuclear matrix-associated proteins p54nrb and matrin in sequestering early polyoma RNA transcripts in the nucleus (46). Even though the total expression level of Bright may be reduced in the fasted cells, the nuclear import, export, and retention activities are balanced so as to maintain a minimal required level of nuclear Bright for 5 days.
Factors involved in cell cycle control, such as Cdc25B (43), Cdc25C (33, 37), cyclin B (15, 37), and cyclin D1 (1, 2), were reported to be regulated by cellular localization and to shuttle constantly between the nucleus and cytoplasm. Their localization is thought to be controlled by a balance of nuclear import and export activities. Bright localization shares some of these features. As shown in our LMB (Fig. 2A) and cell cycle (Fig. 7A) experiments, Bright appears to be shuttling actively within transfected Cos-7 cells during S phase. Furthermore, S-phase BCL1 B cells displayed an elevated nuclear/cytoplasmic ratio of Bright, which decreased as the majority of the cell population progressed into G2/M (Fig. 7B). These observations contribute to the growing evidence of Bright involvement in cell cycle regulation (12, 29, 35). Senescence rescue appears to require activation of E2F1 through a cyclin E1-dependent mechanism (29). E2F1 is almost exclusively nuclearly localized. Perhaps the cytoplasmic localization of Bright could be critical for the timing of its proposed interaction with E2F1 (35). That is, a cytoplasmic localization for Bright in G1 would be an ideal location if Bright's job were to sequester hypophosphorylated pRb from potential E2F/pRb repressive complexes in the nucleus.
If nuclear localization is the only mechanism by which Bright regulates its target genes, then a form constitutively localized to the nucleus should be an equivalent or possibly an even more efficient transactivator than the shuttling, wild-type form of Bright. To address this, we employed an NIH 3T3 cell system with stable integration of a reporter (luciferase) driven by the S107 VH1-associated 5' MARs and stable transduction with Bright wild-type or mutant retroviruses. We found that nuclear localization of Bright in itself is insufficient for transactivation activity. The NES-deficient G532A mutant, which accumulated in the nucleus at levels equivalent to that of the wild type, failed to transactivate the integrated 5' MAR target. The G532A mutant is fully competent to oligomerize and to bind DNA (data not shown). Therefore, either Bright must shuttle through the cytoplasm to transactivate or this residue within the REKLESß is essential for a yet-to-be-determined function (e.g., a heterologous protein-protein interaction) required for the transactivation activity.
A number of signaling pathways regulate transcription factors by controlling their localization through nucleocytoplasmic shuttling (reviewed in reference 48). This has become increasingly evident with inducible factors, such as NFAT, NF-
B, and Pho4. What are their fates if rendered constitutively nuclear? Nucleus-only NFATs are strongly transactivating (27). However, translocation of NF-
B or Pho4 into the nucleus in itself is insufficient to drive target genes (22, 47). The common control feature of these and most other shuttling proteins is phosphorylation. The phosphorylation events that modify each of the examples cited above have unique and separable roles in regulating export, import, and ability to activate transcription in the nucleus (48). Although Bright interacts with the cytoplasmic tyrosine kinase Btk (40), it has not been shown to be phosphorylated by Btk (40) or by any other tyrosine or serine/threonine kinases, as judged by conventional immunoprecipitation/Western and in vitro assays (C. Webb, personal communication; P. W. Tucker, unpublished results). At our current level of resolution, the nuclear and cytoplasmic forms of Bright are indistinguishable. Thus, another mechanism, distinct from phosphorylation, is likely to regulate Bright localization and is intimately linked to its transcriptional control as well.
| ACKNOWLEDGMENTS |
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The research was supported by the NIH (CA31534 and AI64886) and the Mary Betzner Morrow Centennial Endowment in Molecular Genetics to P.W.T.
| FOOTNOTES |
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