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Molecular and Cellular Biology, March 2007, p. 1823-1843, Vol. 27, No. 5
0270-7306/07/$08.00+0 doi:10.1128/MCB.01297-06
Copyright © 2007, American Society for Microbiology. All Rights Reserved.
Piotr Kurys,1,
Cem Elbi,2,
Akhilesh K. Nagaich,2,
Anindya Hendarwanto,2
Thomas Slagsvold,1
Ching-Yi Chang,3
Gordon L. Hager,2* and
Fahri Saatcioglu1*
Department of Molecular Biosciences, University of Oslo, Postboks 1041 Blindern, 0316 Oslo, Norway,1 Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, Bethesda, Maryland 20892,2 Department of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, North Carolina 277103
Received 14 July 2006/ Returned for modification 24 August 2006/ Accepted 8 December 2006
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As with other nuclear receptors, AR has three distinct domains: an N-terminal transactivation domain (NTD), a central DNA binding domain, and a C-terminal ligand binding domain (LBD). Upon binding to DNA, sequences found in the NTD (called activation function 1 [AF-1]) and LBD (AF-2) facilitate activation of transcription. Genetic and biochemical experiments have indicated that the LBD of AR interacts with the NTD upon ligand binding (7, 14, 27, 32, 82), which is similar to the results observed for the ER (39). This intramolecular interaction has been shown to be important for optimal receptor activity (7, 12, 14, 32, 82). However, these studies have been performed with truncated versions of the receptors in mammalian or yeast two-hybrid systems or in biochemical experiments in vitro. Therefore, the importance of these intramolecular and possible additional intermolecular (between two AR proteins) interactions for the function of AR with respect to its target gene in vivo has not been directly assessed.
Androgens are required for the growth of
prostate cancer in the initial stages; this requirement is the basis
for hormonal therapy that is a critical therapeutic option in advanced
prostate cancer (30). An
integral part of this therapy is the use of antiandrogens to block AR
function; for example, the nonsteroid antagonists
bicalutamide (Casodex) and flutamide
(Eulexin) are two compounds commonly used in prostate cancer
therapy today (53). These
compounds antagonize AR function by binding to the LBD of AR in
competition with the natural agonists testosterone and
5
-dihydrotestosterone
(12,
47,
61). Even though it is
known that the AR-antagonist complex does not activate transcription,
it is not completely clear which steps are influenced by antiandrogens
in the AR signaling pathway. For example, it was long held (based
largely on biochemical and in vitro experiments) that the antagonists
may block nuclear import or DNA binding. However, data exist supporting
the opposing view (see, for example, references
36 and
47). In fact, it has
recently become clear that AR antagonists actually facilitate AR-DNA
association but inhibit transcriptional activation via the recruitment
of corepressors (68). In
support of this view, a recent study demonstrated that antagonist
function can be blocked by the disruption of corepressor recruitment
(85). It has also been
suggested, as for ER (for a review, see reference
25), that antagonists
give rise to a different conformation of the LBD compared with the
agonists, thereby affecting the interactions of AR with coactivators
and corepressors when it is bound to DNA
(8). However, modulation
of the dynamic properties of AR with respect to its target gene in the
presence of different ligands in vivo and its functional consequence
have not been studied to date in a living cell.
Until recently, there was little information about the mode of action of nuclear receptors in living cells. The classical view of nuclear receptor function has been that ligand-activated receptors are immobilized on the template as long as the ligand is present in the cellular milieu (5), serving as a platform for the assembly of large transcriptional complexes (13, 48). Recent advances in green fluorescent protein (GFP) technology and quantitative live cell microscopy have led to the discovery of novel principles for nuclear receptor action, leading to the proposal of an alternative model, the "hit-and-run" hypothesis (18, 49, 56, 63, 65). According to this model, the receptor transiently interacts with the promoter, recruits other factors, and is itself dynamically displaced from the promoter (49, 62).
The dynamic interaction of nuclear receptors with their target genes in living cells in response to the presence of various ligands, both agonists and antagonists, has not been quantitatively characterized. Furthermore, it is not clear whether there are inter- and intramolecular interactions when a nuclear receptor is bound to DNA in its transcriptionally active form. In the present study, we systematically investigated the dynamic interactions of AR with its target promoter in living cells compared to nontarget site interactions in the nucleus in response to a complete range of agonists, partial antagonists, and pure antagonists. We determined the ability of AR to selectively recruit Swi/Snf ATP-dependent chromatin-remodeling complex to the target promoter in response to the presence of different AR ligands. We then correlated the changes in AR kinetics to the changes in chromatin remodeling and transcriptional activation. Finally, we used fluorescence resonance energy transfer (FRET) (84) to directly assess possible interactions within and between AR molecules at the AR target gene during transcriptional activation. Thus, our observations provide an integrated kinetic framework for the real-time gene regulatory events that are critical for the in vivo function of AR with respect to its target gene.
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The AR portion of pTRE-Tight-EGFP-AR was cut with XbaI and EcoRI (partial) and inserted into the same sites of pECFP-C1 (BD Biosciences Clontech) to create pECFP-C1-AR. The AR sequence from pTRE-Tight-EGFP-AR was cut with XhoI and BamHI and inserted into the same sites of pEYFP-N1 (BD Biosciences Clontech) to create pEYFP-N1-AR. The stop codon was removed, and the frame was corrected by PCR (primers available upon request).
The PvuI-XbaI fragment of pEGFP-C1-AR-E897A was inserted into the same sites of pECFP-C1-AR to create pECFP-C1-AR-E897A, and the PvuI-BamHI fragment of pEGFP-C1-AR-E897A was inserted into PvuI-BamHI sites of pEYFP-N1-AR to create pEYFP-N1-AR-E897A. The stop codon was removed, and the frame was corrected by PCR (primers available upon request).
The NheI-KpnI AR fragment of pEYFP-N1-AR was replaced with the NheI-KpnI ECFP-AR fragment from pECFP-C1-AR to create pEYFP-N1-ECFP-AR, expressing fusion protein ECFP-AR-EYFP. The PvuI-BamHI fragment containing an E897A mutation was transferred from pEGFP-C1-AR-E897A into the same sites of pEYFP-N1-ECFP-AR. The stop codon was removed, and the frame was corrected by PCR (primers available upon request).
CFP-YFP fusion plasmid has previously been described (35). pPUR plasmid (BD Biosciences Clontech) was used without modifications.
The correct sequences of all final constructs were confirmed by sequencing.
Reporter plasmids MMTV-LUC (42) and -285PB-LUC(31) have been described previously.
Agonists and antagonists.
R1881
(methyltrienolone) was purchased from Dupont-NEN. Both
5
-dihydrotestosterone (DHT) and testosterone (TST) were kind
gifts from Jens Berg (hormone laboratory, Aker University Hospital,
Oslo, Norway). Cyproterone acetate (CPA) and mifepristone (RU486) were
purchased from Sigma, while bicalutamide was obtained from Astra
Zeneca. Hydroxyflutamide (OHF) was purchased from Schering-Plough
Research Institute, Kenilworth, NJ. All ligands were dissolved in 100%
ethanol and used at a working concentration of 108
M (R1881, DHT, and TST) or 106 M (CPA, RU486,
bicalutamide, and OHF).
Cell culture and generation of stable cell lines. Stable cell lines expressing GFP-AR and GFP-AR-E897A under the control of the Tet-Off inducible system (24, 69) were obtained as stably transfected derivatives of murine mammary adenocarcinoma cell line 3134. The 3134 cell line contains multiple copies of a bovine papillomavirus-mouse mammary tumor virus (MMTV)-long terminal repeat (LTR)-ras fusion gene (78). The wild-type GFP-AR and mutant GFP-AR-E897A constructs were transfected along with a puromycin resistance plasmid, pPUR, into a Tet-Off cell line (5858 cells). The 5858 cell line was generated by transfecting pTet-Off (Bdbiosciences Clontech) into the 3134 cell line. Colonies were selected in media supplemented with 0.55 µg/ml puromycin (BD Biosciences Clontech) for GFP-AR and 1.1 µg/ml puromycin for GFP-AR-E897A. The cells were maintained in Dulbecco's modified Eagle medium (Gibco) supplemented with 10% fetal bovine serum (Gemini, Woodland, CA), 2 mM L-glutamine, 1 mM sodium pyruvate, 0.1 mM nonessential amino acids, 5 mg/ml penicillin-streptomycin, 1 mg/ml G418 (Gibco), 0.55 µg/ml (GFP-AR) or 1.1 µg/ml (GFP-AR-E897A) puromycin, and 10 µg/ml tetracycline (FisherBiotech, Fair Lawn, NJ) at 37°C in 5% CO2 in a humidified incubator. The cell lines with the inducible expression of GFP-AR or GFP-AR-E897A were named 3108 or 3109, respectively.
Protein extraction and Western analysis. Cells were harvested by scraping in phosphate-buffered saline and centrifugation. Whole-cell extracts were prepared by resuspending the cells in 200 µl of lysis buffer (20 mM HEPES [pH 7.4], 300 mM NaCl, 1.5 mM MgCl2, 0.2 mM EDTA, 0.1% Triton X-100, 0.5 mM dithiothreitol [DTT]) with a protease inhibitor cocktail mix (Calbiochem). After the extraction, the proteins were resolved on a 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (12% SDS-PAGE) gel (Bio-Rad) and transferred to a polyvinylidene difluoride membrane (Bio-Rad). The membrane was blocked, followed by incubation with the primary antibodies for AR (N-20; Santa Cruz) (1:250), GFP (AbCam) (1:500), ß-tubulin (Sigma) (1:1,000), or ß-actin (Calbiochem) (1:30,000). Horseradish peroxidase-linked secondary antibodies (Pierce Biochemicals) and an enhanced luminescence kit (Amersham Pharmacia) were used for the detection of proteins.
Luciferase reporter assay. Cells were grown in six-well culture plates in medium without tetracycline (3108 and 3109 cell lines). One day after plating, the cells were transfected with 100 to 150 ng of luciferase reporter (MMTV-LUC or -285PB-LUC), 10 ng of the appropriate AR construct (3134 cells only), and carrier DNA to a total of 1 µg DNA per well using FuGene6 (Roche) according to the manufacturer's recommendations. At 6 h after transfection, the medium was changed to phenol red-free Dulbecco's modified Eagle medium supplemented with 0.5% charcoal-stripped serum. One day after transfection, the cells were treated with various ligands for 24 h. The cells were harvested and lysed in luciferase cell culture lysis reagent (25 mM Tris-HCl [pH 7.8], 2 mM DTT, 10% glycerol, and 1% Triton X-100), and luciferase activity was determined using a luciferase assay system (Promega) and a Wallac Victor2 1420 Multilabel counter (Perkin Elmer). Protein concentrations were measured using a Bio-Rad protein assay, and luciferase activity was normalized to total protein.
Time-lapse microscopy. Cells were transferred to Lab-Tek one-well chamber slides (Nalge Nunc International, Naperville, IL) for live-cell imaging. The cells were grown in medium without tetracycline for two days prior to the experiment, including one day in phenol red-free medium supplemented with 2% charcoal-stripped serum and one day in phenol red-free medium supplemented with 0.5% charcoal-stripped serum. The cells were observed at 37°C using a Zeiss LSM 510 laser-scanning confocal microscope equipped with a 100x/1.3 numerical-aperture oil immersion objective and a 40 mW argon laser.
RNA FISH and immunofluorescence analysis. Cells were grown on 22-mm-square coverslips placed in six-well culture plates. Cell culture conditions were same as described for the time-lapse microscopy. At the day of the experiment, the cells were treated with the ligands for 45 min (R1881, DHT, TST, and RU486) or 90 min (CPA, bicalutamide, OHF), fixed with 4% paraformaldehyde, and processed for indirect immunofluorescence microscopy combined with RNA fluorescence in situ hybridization (FISH) to detect MMTV transcript as described previously (62). GFP-AR was detected by using a polyclonal anti-GFP antibody (Molecular Probes), and a polyclonal BRM antibody (AbCam) was used for BRM detection. Polymerase II (PolII) was detected using an RNA PolII 8SWG16 monoclonal antibody (Covance). Images were acquired on a Zeiss LSM 510 META or an Olympus FluoView 1000 confocal laser-scanning microscope. The RNA FISH signals were quantified by using MetaMorph software (Universal Imaging, Downingtown, PA) after subtraction of the background nuclear fluorescence as previously described (62). Then, the integrated total RNA FISH intensity was calculated for each condition and normalized to the level of integrated total RNA FISH intensity in untreated cells to obtain relative RNA FISH intensity values. Line scans were created using Olympus FV10-ASW 1.3b software.
FRAP. Cells were transferred to Lab-Tek one- or two-well chamber slides for live cell imaging (Nalge Nunc International, Naperville, IL). Cell culture conditions were same as described above. Fluorescence recovery after photobleaching (FRAP) analysis was carried out on a Zeiss LSM 510 laser-scanning confocal microscope. The stage temperature was maintained at 37°C, and images were captured with a 100x/1.3-numerical aperture oil immersion objective and 40 mW argon laser.
Five single prebleach images were acquired followed by a brief bleach pulse of 160 ms using 458-, 488-, and 514-nm laser lines at 100% laser power (laser output, 50%) without attenuation. Single optical sections were acquired at 490-ms or 96-ms intervals by using a 488-nm laser line with laser power attenuated to 0.2%. Fluorescence intensities in the regions of interest were analyzed, and FRAP recovery curves were generated using LSM software and Microsoft Excel as previously described (15). Briefly, the fluorescence intensity (In) in a region of interest was determined as In = (It Ibg)/ (Tt Ibg) x (To Ibg)/(Io Ibg), where To is the total cellular intensity during prebleach, Tt is the total cellular intensity at time point t, Io is the average intensity in the region of interest during prebleach, It is the average intensity in the region of interest at time point t, and Ibg is the average intensity in an area outside the monitored cell. All of the quantitative data for FRAP recovery kinetics represent means ± standard errors from at least 25 cells imaged in three independent experiments.
To determine the size of total bound fractions, the FRAP method involving bleaching of half of the nucleus in a cell expressing GFP-AR or GFP-AR-E897A was used as described previously (60). Two single prebleach images were acquired and followed by a brief bleach pulse of 400 ms. The recovery of the fluorescence signal in the bleached region and the loss of signal in the unbleached region were monitored simultaneously by time-lapse microscopy. The fluorescence intensity in a region of interest was normalized to the prebleach fluorescence intensity in the region of interest as R = (It Ibg)/(Io Ibg) where It is the average intensity in the region of interest at time point t, Io is the average intensity in the region of interest during prebleach, and Ibg is the average intensity in an area outside the monitored cell. We then experimentally determined the size of total bound fraction of AR and AR-E897A in response to the presence of ligands based on the fact that the diffusion time of AR or AR-E897A in the nucleus is shorter than the bleach time used in the experimental conditions. The fluorescence intensity in the unbleached region before bleaching was compared to the intensity seen immediately after bleaching as previously described (60), and the total chromatin-bound fractions were calculated (see Table 1). In all FRAP experiments, signal loss during the recovery period was less than 5% of the initial fluorescence intensity. The bleach extent and depth were confirmed by analyses of three-dimensional image stacks along the z plane of the image axis of fixed cells. All FRAP recovery curves were generated from background subtracted images. Student's t test was used to determine the statistical significance of results (see Fig. 7H).
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View this table: [in a new window] |
TABLE 1. Kinetic
properties of AR and AR-E897A
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FIG. 7. Increased
mobility of transcriptionally deficient AR mutant at the HRE. (A to E)
FRAP analysis of GFP-AR-E897A at the MMTV array. The 3109 cells were
treated with R1881 (108 M) for 45 min. The cells
were imaged before and during recovery after bleaching of GFP-AR-E897A.
Images collected at 10 s (C), 20 s (D), and
30 s (E) demonstrate the rapid recovery kinetics of
GFP-AR-E897A at the MMTV array. Bar in panel E, 4 µm.
(F) Quantitative FRAP analysis of GFP-AR-E897A at the MMTV
array. Cells were either left untreated or were treated with
108 M R1881, 108 M DHT,
108 M TST, 106 M CPA, or
106 M RU486 for 45 min or with
106 M bicalutamide (Casodex [CAS]) or
106 M OHF for 90 min. For each set of conditions,
at least 25 cells from three independent experiments were analyzed.
(G) Time for 50% recovery of fluorescence
(t1/2) for GFP-AR-E897A on the MMTV array in the
presence of the various ligands. The t1/2 values
were calculated from the recovery curves (n > 25 for
each ligand); bars represent standard errors. (H)
Quantitative comparison of FRAP recovery kinetics between wild-type AR
and the AR-E897A mutant. (I and J) Quantification of BRM loading and
RNA FISH signal in 3109 cells treated with the various ligands. The
histogram shows relative BRM and RNA FISH intensities from at least 10
cells for BRM loading and 20 cells for RNA FISH for each ligand
condition; bars represent standard errors. Quantitative analysis of
data was carried out as described in Materials and Methods. The
experiment was performed twice with similar results.
*,
P < 0.05 compared to the results seen in the absence
of ligand, as assessed by Student's t
test.
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In vitro reconstitution of MMTV chromatin. A 1.1-kb PleI/NcoI fragment of MMTV LTR (positions 437 to +674) was immobilized on Dynal magnetic beads as previously described (56). The immobilized fragment was reconstituted into chromatin by use of preblastoderm embryo extract supplemented with mouse histone octamers. The reconstituted chromatin was then incubated in embryo extract buffer {10 mM HEPES [pH 7.6], 10 mM KCl, 1.5 mM MgCl2, 0.5 mM EGTA, 10% glycerol, 10 mM ß-glycerophosphate, 1 mM DTT, and 1 mM AEBSF [4-(2-aminoethyl) benzenesulfonyl fluoride hydrochloride]}with Sarkosyl (0.05% final concentration) at room temperature for 5 min and washed twice with cold EX-N buffer (10 mM HEPES [pH 7.6], 10 mM KCl, 1.5 mM MgCl2, 0.5 mM EGTA, 10% glycerol, 10 mM ß-glycerophosphate, 1 mm DTT, 0.05% aprotinin, pepstatin, and leupetin, 2 mg/ml bovine serum albumin [BSA]). Reconstituted chromatin was directly used in pulldown experiments with purified AR.
Chromatin and DNA pulldown assays. Prior to the DNA binding assay, MMTV DNA or chromatin was washed twice with binding buffer (20 mM HEPES [pH 7.3], 50 mM NaCl, 10 mM glycerol, 0.5 mm EDTA, 5 mm MgCl2, 0.1% NP-40, 1 mM DTT, 1 mM aminoethylbenzenesulphonyl fluoride, 1 µg/ml concentrations each of aprotinin, pepstatin, and leupetin, 2 mg/ml BSA) and poly(dI-dC) (10 µg/µl). Purification of hSwi/Snf complexes was performed as described previously (18) with cells expressing the Flag-tagged INI1 subunit (70). The binding reactions were carried out in 50 µl of binding buffer containing 100 ng MMTV DNA or chromatin with or without 1 nM purified androgen receptor bound to DHT, 23.5 µg of HeLa nuclear extract (N.E.) or purified hSWI/SNF (700 ng), and/or 1 mM ATP. After incubation at 30°C for 15 min, the template was washed twice with binding buffer without BSA or poly(dI-dC) and analyzed by 7.5% SDS-PAGE. Western analysis was performed with antisera for AR (441 [sc-7305]; Santa Cruz Biotechnology).
FRET. Acceptor photobleaching FRET analysis on fixed cells was performed as described previously (35). In the presence of FRET, bleaching of the acceptor yellow fluorescent protein (YFP) results in a significant increase in the fluorescence intensity of donor cyan fluorescent protein (CFP). The 3134 cells were transfected with pECFP-C1, pEYFP-N1, CFP-YFP, pECFP-C1-AR, pEYFP-N1-AR, pEYFP-N1-ECFP-AR, or pEYFP-N1-ECFP-AR-E897A. The cells were fixed in 4% paraformaldehyde, washed with phosphate-buffered saline, and imaged on an Olympus FluoView 1000 confocal laser-scanning microscope equipped with a 100x/1.3 numerical-aperture oil objective. Two prebleach and two postbleach images were captured on CFP and YFP channels. Bleaching was done in the YFP channel using a 515-nm laser line at 2% intensity zoomed at x46. Bleaching due to imaging was minimal, since images were collected at low laser intensity (8% of a 458 nm laser and 2% of a 515 nm laser) and bleaching was monitored by comparison of prebleach and postbleach image pairs. Each image was collected first in the CFP channel and then in YFP channel. No cross-talk was detected between YFP and CFP channels during imaging. Fluorescence intensities in all regions of interest were corrected for background fluorescence, and FRET efficiency was calculated according to the following formula as described previously (35): EF = (Ipost Ipre)/Ipost, where Ipost is CFP intensity after bleaching and Ipre is CFP intensity before bleaching.
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We
first developed an inducible cell line in which GFP-AR expression is
regulated by tetracycline and confirmed this by Western analysis of
total cell lysates by using antibodies against both GFP and AR. As
shown in Fig.
1A, there was robust induction of GFP-AR expression resulting in a band of
expected size (
130 kDa) upon removal of tetracycline from the
medium. This cell line was named 3108. The AR antiserum also detected
an additional band at around 90 kDa (lane 2) which might represent a
proteolytic AR fragment. As this band is much less abundant than the
full-length GFP-AR (ratio, 5:1), the nature of this band was not
investigated further.
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FIG. 1. Functional
characterization and intracellular localization of GFP-AR.
(A) Tetracycline-regulated expression of GFP-AR. Total cell
extracts were prepared from GFP-AR-expressing 3108 cells in the
presence (lanes 1 and 3) or absence (lanes 2 and 4) of tetracycline.
The extracts were probed for GFP-AR by using anti-AR (lanes 1 and 2) or
anti-GFP (lanes 3 and 4) antibodies by Western blotting.
ß-Actin was used as a loading control (lower panels). (B and C)
GFP-AR maintained wild-type response to various AR ligands. 3108 cells
were transfected with MMTV-LUC (B) or -285PB-LUC
(C) constructs and treated with R1881
(108 M), DHT (108 M), TST
(108 M), CPA (106 M), RU486
(106 M), bicalutamide (106 M),
or OHF (106 M) for 24 h. The cells were
harvested, and reporter gene activity was assayed and normalized to
total protein amount. The results represent the averages of the results
of three replicate experiments, with bars representing standard
deviations. The experiments were repeated twice with similar results.
(D to K) GFP-AR translocates to the nucleus in response to AR ligands.
3108 cells were treated with ligands as described for panels B and C,
and the translocation of GFP-AR was followed by in vivo time-lapse
confocal microscopy at 37°C. GFP-AR was completely translocated
to the nucleus after 30 min in response to R1881 (E), DHT (F), TST (G),
and RU486 (I) and after 120 min in response to CPA (H),
bicalutamide (Casodex [CAS]) (J), and OHF (K). No translocation was
observed in the absence of ligand (D). Bar in panel K, 4
µm.
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It is known that upon ligand binding AR translocates to the nucleus (3, 23, 76, 77). However, most studies have been performed with transiently expressed AR and with only a small set of ligands. Furthermore, we wanted to determine the functionality and the kinetics of GFP-AR nuclear translocation in our inducible cell system. We therefore carried out a detailed time-lapse analysis of GFP-AR translocation in 3108 cells in response to agonists, partial antagonists, and pure antagonists (Fig. 1D to K). All seven ligands caused nuclear translocation of the receptor but with significantly different temporal kinetics (Fig. 1; also see Fig. S1 posted at http://www.imbv.uio.no/gen/groups/fs/AR Dynamics). In the presence of agonists R1881, DHT, and TST (Fig. 1E to G) as well as that of the partial antagonist RU486 (Fig. 1I), the translocation was rapid, with predominantly nuclear localization of GFP-AR within 30 min of ligand addition. In the presence of CPA, bicalutamide, and OHF (Fig. 1H, J, and K) the translocation was significantly slower, and predominantly nuclear localization of GFP-AR was not observed until at least 120 min after ligand addition. The translocation dynamics for all ligands was similar to what was observed for endogenous AR in LNCaP cells (androgen-responsive prostate cancer cell line) as detected by indirect immunofluorescence (reference 77; also see Fig. S2 posted at http://www.imbv.uio.no/gen/groups/fs/AR Dynamics). There were also differences in the distribution of GFP-AR in the nucleus induced by the different ligands (see Fig. S3 posted at http://www.imbv.uio.no/gen/groups/fs/AR Dynamics): while the agonist-bound GFP-AR distributed in multiple bright foci, the antagonist-bound AR showed a diffuse homogenous distribution in the nucleus. Cells treated with the partial antagonists CPA and RU486 had an intermediate pattern, with visibly less formation of foci than the agonists. These data are consistent with previous studies (3, 76, 77). The functional relevance of this heterogeneous distribution induced by the different ligands is currently unclear. Collectively, these results demonstrate that the GFP-AR was functional and maintained the same general mobility properties as endogenous AR.
Ligand-dependent recruitment of GFP-AR to HREs in vivo. In order to examine the ligand-dependent recruitment of GFP-AR to the MMTV promoter in vivo, RNA FISH analysis was performed combined with indirect immunofluorescence microscopy. In the absence of ligand, GFP-AR was mainly distributed in the cytoplasm and no significant binding to the MMTV array was observed (Fig. 2A At the array, there was a low level of basal MMTV transcription, and GFP-AR fluorescence intensity peaks and nascent MMTV transcripts did not coincide (Fig. 2A3 and 2A4). In cells treated with agonists R1881, DHT, and TST, a single bright GFP fluorescence signal was detected within the nucleus in addition to the diffuse nucleoplasmic GFP-AR signal (Fig. 2B to D). Overlay of the MMTV RNA FISH and the GFP-AR immunofluorescence data confirmed ligand-dependent recruitment of GFP-AR to the MMTV promoter.
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FIG. 2. Recruitment
of AR to the MMTV array and effect of AR ligands on MMTV transcription
in vivo. (A to H) GFP-AR colocalizes with nascent MMTV transcripts, as
detected by RNA FISH and indirect immunofluorescence microscopy. The
3108 cells expressing GFP-AR were treated with R1881
(108 M), DHT (108 M), TST
(108 M), or RU486 (106 M) for
45 min and with CPA (106 M), bicalutamide (Casodex
[CAS]) (106 M), or OHF (106 M)
for 90 min and were subjected to RNA FISH and immunofluorescence
microscopy as described in Materials and Methods. Anti-GFP antibody
staining is shown in column 1 (panels A1 to H1),
and RNA FISH staining is shown in column 2 (panels A2 to
H2). Column 3 (panels A3 to H3) shows
an overlay of both signals for each ligand. Colocalization of GFP-AR
and RNA FISH signals on the MMTV array is indicated by yellow and was
observed for all ligands. The arrows in the overlay images point to the
position of line scans. In the line scans in panels B4 to
H4, but not in panel A4, the fluorescence
intensity peaks for GFP-AR and MMTV transcript coincided, indicating
the recruitment of AR to MMTV promoter. (I) Quantification of
MMTV RNA transcripts in 3108 cells. The cells were treated with the
various AR ligands as described above. The histogram shows the relative
RNA FISH intensities for at least 30 cells for each ligand condition,
with error bars representing standard errors. Quantitative analysis of
RNA FISH data was carried out as described in Materials and Methods.
The experiment was performed three times with similar results. Bar in
panel H, 4
µm.
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Treatment of the cells with the pure antagonists bicalutamide and OHF also resulted in the recruitment of GFP-AR to the MMTV promoter (Fig. 2G to H; also see Fig. S4 posted at http://www.imbv.uio.no/gen/groups/fs/AR Dynamics), which was also confirmed by line scan analysis (Fig. 2G4 and H4). Interestingly, the size of GFP-AR fluorescence signal at the array with pure antagonists was smaller than that of the signal seen with pure agonists and partial antagonists, suggesting a decrease in the loading of AR to its binding site in vivo (see Fig. S4 posted at http://www.imbv.uio.no/gen/groups/fs/AR Dynamics). Quantitative RNA FISH analysis further revealed that under these conditions there were only basal levels of MMTV transcription (Fig. 2I). These data demonstrate that all ligands tested recruit GFP-AR to the MMTV promoter but that only the pure agonists and the partial antagonist CPA and, to some extent, RU486 induce transcription in vivo.
Effect of ligands on the nuclear mobility of AR at HREs in living cells. Recruitment of GFP-AR to the MMTV promoter by the various AR ligands enabled us to dissect the kinetic properties of GFP-AR bound to its target site in live cells. To that end, we used the photobleaching technique FRAP. As FRAP kinetics reflects the overall mobility of a protein (60), it can be used to quantitatively measure the kinetics of binding of proteins to chromatin in living cells (49).
To study the binding kinetics of AR at the HREs in vivo, GFP-AR expression was induced in 3108 cells by removal of tetracycline and the cells were treated with the different ligands. GFP-AR bound to the MMTV array was bleached using a brief laser pulse. The recovery of GFP-AR fluorescence signal in the bleached region was monitored using in vivo time-lapse microscopy. The recovery of R1881-bound GFP-AR was very fast, reaching 80% of prebleached levels within 50 s (Fig. 3A to F), and complete recovery was observed around 150 s (data not shown). In the absence of hormone, GFP-AR showed the fastest recovery kinetics, representing the freely diffusing pool of the receptor in the nucleus (Fig. 3F). The AR recovery kinetics was significantly slower when the GFP-AR was bound to agonists compared to the results seen with the pure antagonists. In the presence of R1881, DHT, and TST, the times required to reach half-maximal recovery, the t1/2, were 3.6, 5.3, and 5.0 s, respectively (Fig. 3G). Interestingly, the t1/2 for unliganded AR (0.2 s) was highly similar to the t1/2 for bicalutamide (0.5 s) and OHF (0.5 s), suggesting that the interaction of antagonist-bound AR with a genomic target is very transient (Fig. 3G). The partial antagonists CPA and RU486 showed a somewhat different pattern. The CPA recovery curve lay between those for agonists and antagonists, with a t1/2 of 1.1 s. RU486, however, showed a recovery that is similar to the agonists, with a t1/2 of 4.3 s. Under all conditions, the recovery time was still very rapid, indicating a transient interaction between AR and its target HREs. Compared to PR (62) and GR (49), AR had a slower recovery kinetics, suggesting that there are differences in the mechanism of receptor-promoter interactions for AR compared to GR and PR.
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FIG. 3. Effect
of ligands on the exchange of AR at its cognate binding site. (A to E)
FRAP analysis of GFP-AR at the MMTV array. The 3108 cells were treated
with R1881 (108 M) for 45 min. The cells were
imaged before and during recovery after bleaching of GFP-AR. Images
collected at 10 s (C), 30 s (D), and 60 s
(E) demonstrate the rapid recovery kinetics of GFP-AR at the
MMTV array. Bar in panel E, 4 µm. (F) Quantitative
FRAP analysis of GFP-AR at the MMTV array. Cells were either left
untreated or were treated with 108 M R1881,
108 M DHT, 108 M TST, or
106 M RU486 for 45 min and with
106 M CPA, 106 M bicalutamide
(Casodex [CAS]), or 106 M OHF for 90 min. For each
set of conditions, at least 25 cells from three independent experiments
were analyzed. (G) Time for 50% recovery of fluorescence
(t1/2) for GFP-AR on the MMTV array in the presence
of the various ligands. The t1/2 values were
calculated from the recovery curves (n > 25 for each
ligand condition); error bars represent standard
errors.
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FIG. 4. Ligand-dependent
recruitment of BRM chromatin-remodeling complex by AR to the MMTV
array. (A to T) Endogenous BRM colocalizes with nascent MMTV
transcripts, as detected by RNA FISH and indirect immunofluorescence
microscopy. 3134 cells were left untreated (A to D) or treated with
108 M R1881 (E to H) or 106 M
RU486 (M to P) for 45 min or with 106 M CPA (I to
L) or 106 M OHF (Q to T) for 90 min. The cells were
subjected to RNA FISH and immunofluorescence microscopy as described in
Materials and Methods. Anti-BRM antibody staining is shown in column 1
(panels A, E, I, M, and Q), and RNA FISH staining is shown in column 2
(panels B, F, J, N, and R). Column 3 (panels C, G, K, O, and S) shows
an overlay of both signals for each ligand. Significant colocalization
of endogenous BRM and RNA FISH signals on
the MMTV array is indicated by yellow and was observed only for R1881
and CPA. The arrows in the overlay images point to the positions of
line scans. In the line scans in panels H and L, but not those in
panels D, P, and T, the fluorescence intensity peaks for BRM and MMTV
transcript coincided, indicating the recruitment of BRM to the MMTV
promoter. (U and V) Quantification of BRM loading and the RNA FISH
signal in 3134 cells treated with the various AR ligands. The histogram
shows relative BRM (U) and RNA FISH (V) intensities from at least 20
cells for each ligand condition; bars represent standard errors.
Quantitative analysis of data was carried out as described in Materials
and Methods. The experiment was performed twice with similar results.
Bar in panel S, 4 µm.
*,
P < 0.05 compared to the results seen in the absence
of ligand, as assessed by Student's t
test.
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FIG. 5. Energy-dependent
displacement of AR from its binding site during chromatin remodeling in
vitro. (A) Diagram for chromatin pulldown assay using
chromatin reconstituted onto MMTV DNA attached to streptavidin-coated
magnetic beads. (B) A MMTV LTR DNA fragment was reconstituted
into chromatin using purified histones. A DNA pulldown assay was
carried out by incubation of purified AR-DHT complex with MMTV
chromatin (lanes 3 to 8) or naked MMTV DNA (lanes 9 to 14) in the
presence of ATP, purified Swi/Snf, or HeLa nuclear extract as
indicated. Associated proteins were analyzed by SDS-PAGE and Western
blotting using primary antibody against
AR.
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FIG. 6. Functional
characterization and intracellular localization of mutant AR with
compromised transcriptional activity. (A) Tetracycline
(Tet)-regulated expression of GFP-AR-E897A. Total cell extracts were
prepared from GFP-AR-expressing 3108 cells (lanes 1 and 2) and
GFP-AR-E897A-expressing 3109 cells (lanes 3 and 4) in the presence
(lanes 1 and 3) or absence (lanes 2 and 4) of tetracycline. The
extracts were probed with an anti-AR antibody by Western blotting.
ß-Tubulin was used as a loading control (lower panel). (B and
C) GFP-AR-E897A is deficient in transcriptional activity in response to
AR ligands. 3109 cells were transfected with MMTV-LUC (B) or
-285PB-LUC (C) constructs and treated with R1881
(108 M), DHT (108 M), TST
(108 M), CPA (106 M), RU486
(106 M), bicalutamide (Casodex [CAS])
(106 M), or OHF (106 M) for
24 h. The cells were harvested, and reporter gene activity
was assayed and normalized to total protein amount. The results
represent the averages of three replicate experiments, with bars
representing standard deviations. These experiments were performed
twice with similar results. (D to K) GFP-AR-E897A translocates to the
nucleus in response to AR ligands. 3109 cells were treated with ligands
at concentrations as described for panels B and C, and the
translocation of GFP-AR-E897A was followed by in vivo time-lapse
confocal microscopy. GFP-AR-E897A was predominantly localized to the
nucleus after 30 min in response to the presence of R1881 (E), DHT (F),
TST (G), and RU486 (I), 45 min in response to CPA (H), and 120 min in
response to bicalutamide (Casodex [CAS]) (J) and OHF (K). No
translocation was observed in the absence of ligand (D). Bar in panel
K, 4
µm.
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To assess whether AR-E897A has defects in its kinetic and binding properties for targeting genes in vivo, we performed FRAP analysis using the 3109 cells. GFP-AR-E897A was efficiently recruited to the MMTV promoter by all ligands, enabling us to perform FRAP analysis of array-bound receptor in the presence of each ligand (Fig. 7A to F). Quantitative FRAP analysis showed fastest recovery of GFP-AR-E897A in the absence of hormone and in the presence of pure antagonists bicalutamide and OHF (Fig. 7F). The t1/2 of unliganded GFP-AR-E897A was 0.3 s, and in the presence of bicalutamide and OHF it was 0.2 s (Fig. 7G). In similarity to the wild-type GFP-AR results, FRAP recovery kinetics of GFP-AR-E897A were significantly slower in the presence of pure agonists: the t1/2 in the presence of R1881, TST, and DHT were 4.6 s, 2.8 s, and 3.7 s, respectively (Fig. 7G). In the presence of partial agonist CPA, GFP-AR-E897A showed faster recovery kinetics compared with that seen in the presence of RU486, with t1/2 of 0.5 s and 3.1 s, respectively (Fig. 7G). Importantly, for all ligands tested, the recovery kinetics of GFP-AR-E897A at the HRE was faster than that seen with the wild-type GFP-AR (P < 0.001) (comparison shown for R1881, CPA, and OHF in Fig. 7H). Differences in recovery kinetics between wild-type AR and mutant AR-E897A cannot be explained by differences in molecular weight, since the mutant AR-E897A contains a single amino acid substitution rather than a deletion. Thus, although there is recruitment and dynamic exchange of GFP-AR-E897A with the HREs at the MMTV promoter, the kinetics of this interaction is significantly faster than that seen with wild-type GFP-AR. These data demonstrate that AR mobility is not only affected by the nature of the ligand it is bound to but is also linked to its function, i.e., transactivation potential.
Given that antagonist-bound wild-type AR does not recruit BRM to the array and cannot activate transcription (Fig. 4 and 2I), we assessed whether the transcriptionally deficient AR-E897A could do so. The 3109 cells stably expressing GFP-AR-E897A were treated with the various ligands as before and subjected to RNA FISH analysis and indirect immunofluorescence with BRM antibody. RNA FISH analysis revealed significantly impaired agonist-induced transcriptional activity of the mutant AR on the MMTV array compared to wild-type AR results (Fig. 7I; compare with Fig. 2I); this is consistent with the reporter assay results presented in Fig. 6B and C, where AR-E897A displays significantly impaired activity. In keeping with the involvement of chromatin-remodeling complexes for transcriptionally active promoters, GFP-AR-E897A had reduced recruitment of BRM to the MMTV array in the presence of agonist R1881 compared with the wild-type receptor results (Fig. 7J; compare to Fig. 4U). These data further support the idea of the involvement of chromatin-remodeling complexes in transactivation by AR at its response elements during transcription.
Kinetic modeling of AR interaction with HREs in vivo. In order to extract specific quantitative information from the FRAP experiments described above, we used computational kinetic modeling methods (59, 60). Experimental FRAP recovery data for AR and AR-E897A from Fig. 3 and 7 were fitted using a generalized least-squares and classical compartmental approach as described in Materials and Methods. The recovery kinetics of AR and AR-E897A was most accurately fitted by a two-site binding model with a statistically significant coefficient of variation indicating that both receptors were present at the HREs in at least two distinct kinetic populations with distinct binding kinetics (Fig. 8A to F). For simplicity, we named these two populations the "fast" and "slow" fractions. Kinetic properties of AR and AR-E897A on the MMTV array, namely, the off rates, mean residence times, total chromatin-bound fractions, and the numbers and sizes of kinetically distinct receptor populations, were calculated and are included in Table 1. The statistical significance of kinetic parameters is shown in Table2.
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FIG. 8. Kinetic
modeling of AR and AR-E897A interaction with the HRE. The experimental
FRAP recovery data for AR and AR-E897A presented in Fig.
3F and
7F were fitted using
least-square best fit and classical compartmental approach as described
in Materials and Methods. Two-site binding model gave the best fit for
both AR and AR-E897A, with statistically significant
coefficient-of-variation values. Within the time scale of FRAP
experiments, protein synthesis and protein degradation were presumed
negligible. For Table 1,
kinetic properties of AR and AR-E897A at the MMTV array in response to
various ligands were calculated from the fitted data at Fig.
3F and
7F. Total bound fractions
of AR and AR-E897A in the nucleoplasm were determined as described in
Materials and Methods. For Table
2, the statistical
significance of kinetic modeling parameters was expressed as
coefficient of variation-percent error relative to average value. Note
that the coefficient-of-variation values of koff
are identical to the coefficient-of-variation values of residence
times, since the residence time = 1/koff.
The statistical significance of total bound fractions is expressed as a
standard
deviation.
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TABLE 2. Statistical
significance of kinetic modeling
parametersa
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We have also calculated kinetic properties of GFP-AR-E897A, a transcriptionally deficient AF-2 mutant of AR. As shown in Table 1, the mean residence time of agonist-bound AR-E897A (R1881 or DHT) at the HREs was significantly longer than that seen with pure antagonist-bound AR (OHF) in both the slow and fast fractions. Even though the overall trends for AR and AR-E897A were similar, there were significant differences. For example, the mean residence time of AR-E897A at the HREs in the slow fraction was significantly shorter than the mean residence time of wild-type AR under all ligand treatment conditions. Similarity of overall mobility trend in response to various ligands between the two receptors could be due to residual transactivation function of AR-E897A (Fig. 6B and C). In summary, transcriptionally deficient AR-E897A has a larger fast fraction size and a smaller slow fraction size at the HREs and it also has a shorter residence time in the slow fraction than that seen with transcriptionally competent wild-type AR at the HREs (Table 1). Finally, we experimentally determined the size of the total bound fraction of AR and AR-E897A in the nucleoplasm in response to the presence of ligands as described in Materials and Methods. More than 92% of both AR and AR-E897A proteins are bound to chromatin at steady state in the nucleoplasm in the presence of various ligands, suggesting that transient DNA binding is a common property of AR and AR-E897A. Error margins and coefficient-of-variance values for all kinetic modeling parameters were less than 10% of the measured values (Table 2).
Wild-type AR, but not an AF-2 mutant, recruits RNA PolII to the target HREs. The data obtained so far showed a tight connection between transactivation potential, recruitment of chromatin-remodeling complexes, and actual transcription in situ. In order to further examine this connection, we assessed the recruitment of the transcriptional apparatus to the HRE array by wild-type and mutant AR. To this end, we used confocal immunofluorescence microscopy and RNA PolII antiserum with ligand-treated 3108 and 3109 cells. As shown in Fig. 9, whereas wild-type AR significantly overlapped with PolII on the array (Fig. 9A), AR-E897A did not (Fig. 9B). This suggests that mutant AR cannot recruit the transcriptional apparatus to the array and therefore cannot induce transcription, resulting in a less-engaged receptor with faster recovery kinetics.
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FIG. 9. Transcriptionally
impaired mutant AR does not recruit RNA PolII to the MMTV array.
Endogenous RNA PolII colocalizes with agonist-bound AR at the MMTV
array but not with agonist-bound mutant AR. 3108 (A) and 3109
(B) cells were left untreated (data not shown) or were
treated with 108 M R1881 for 45 min or
106 M CPA for 90 min, as indicated, and subjected
to immunofluorescence analysis with PolII antibody. Column 1 shows
GFP-AR or GFP-AR-E897A expression, column 2 shows staining for PolII,
and column 3 shows the overlay of the two images. Colocalization of
endogenous PolII and GFP signals on the MMTV array is indicated by
yellow in the enlarged square and was observed only for ligand-bound
wild-type AR (A) and not for mutant AR (B). For GFP-AR (A),
but not GFP-AR-E897A (B), the line scans (column 4) show that
fluorescence intensity peaks for GFP and PolII coincided, indicating
the recruitment of PolII to the MMTV promoter by wild-type AR and not
by mutant AR. Bars, 4
µm.
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We generated AR fusion proteins with YFP or CFP at the N terminus or the C terminus or at both termini of wild-type AR or mutant AR-E897A. All of these fusion constructs were first tested for their ability to bind ligand and activate transcription by using the transient transfection assay and the -285PB-LUC reporter. As shown in Fig. 10A, all fusion proteins activated transcription in response to R1881, albeit to a lesser extent for some constructs. Importantly, the doubly labeled ARs with YFP or CFP fused at either end were robust activators of -285PB-LUC, and the AR-E897A mutant fusions were significantly compromised in their transactivation potential compared with corresponding fusions with wild-type AR.
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FIG. 10. FRET
shows predominantly intramolecular interactions of AR at the HRE.
(A) AR fusion proteins induce transcription in a
ligand-dependent manner. 3134 cells were transiently transfected with
-285PB-LUC and the indicated AR constructs. The cells were left
untreated or were treated with R1881 (108 M) for
24 h. The cell extracts were made, assayed for luciferase
activity, and normalized to total protein amount. The results are
presented as severalfold change relative to untreated cell results and
represent the averages of three replicate experiments, with bars
representing standard deviations. The experiments were repeated twice
with similar results. (B to E) FRET analysis of 3134 cells expressing
CFP-AR-YFP. The cells were treated with R1881 (108
M) for 45 min, and acceptor photobleaching FRET was performed at
CFP-AR-YFP bound to the MMTV array as described in Materials and
Methods. The cells were imaged on the CFP channel and YFP channel
before bleaching (B and C) and after bleaching (D and E). The areas
marked by a rectangle are enlarged and shown as pseudocolored insets in
panels B and D. Bleaching of acceptor YFP (E) resulted in an
increase in donor CFP fluorescence (D). Note the increase in AR
fluorescence intensity at the array in the pseudocolored inset in panel
D compared to that shown in the inset in panel B. Bar in panel E, 4
µm. (G) Quantification of FRET analysis. The 3134
cells expressing indicated fusion proteins were treated with R1881
(108 M) for 45 min. Acceptor photobleaching FRET
was then performed on the indicated AR fusion proteins, or their
combination, bound to the MMTV array. FRET efficiencies were calculated
for each condition. The results represent the averages obtained for at
least 15 cells for each set of condition, with error bars representing
standard errors.
*indicates statistical significance of the difference (P
< 0.00019) as calculated by Student's t test.
(G) Cartoon showing a model for intramolecular interactions
in ligand-bound AR molecules creating
FRET.
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The 3134 cells expressing CFP-AR-YFP were treated with R1881 for 45 min, and YFP acceptor fluorescence was bleached at the MMTV array. The fluorescent signal of CFP and YFP was monitored before (Fig. 10B and C) and after (Fig. 10D and E) bleaching. Upon bleaching, an 18% increase in the donor CFP fluorescence was observed, demonstrating an intramolecular interaction between the N and C termini of AR (Fig. 10F). Acceptor photobleaching FRET of CFP-AR-E897A-YFP at the HREs resulted in approximately 12% FRET efficiency, indicating that the intramolecular interactions in the mutant AR-E897A were significantly impaired compared with wild-type AR results (Fig. 10F).
Coexpression of CFP-AR and AR-YFP produced 3% FRET efficiency at the HREs, indicating that there are intermolecular interactions between AR molecules that are bound to the same promoter, albeit these are significantly less strong than the intramolecular interactions between the N and C termini. Mutation of the AF-2 domain did not alter the magnitude of the intermolecular FRET, i.e., that observed with CFP-AR-E897A and AR-E897A-YFP, suggesting that these interactions may not be directly involved in transcriptional activation. Single-color fusion proteins by themselves, or nonfusion CFP and YFP expressed together, did not display any significant FRET. Taken together, these data suggest that intramolecular interactions play an important role in transactivation by AR.
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The dynamic interaction of AR with its specific target sites in chromatin is strongly ligand dependent, as is AR's ability to recruit chromatin-remodeling complexes to its target sites. Based on these observations, it is clear that the nature of the ligand not only determines the type of coregulators that are recruited by AR through induction of different conformational changes in the LBD but also significantly affects the dynamics of AR interactions with chromatin and the chromatin-remodeling complexes, resulting in differential effects on AR function on the target gene in vivo. This is in line with modulation of dynamic interactions of a variety of factors with chromatin (1, 4, 43, 46, 58, 67, 75).
Ligand-specific dynamics of AR on HREs. Previous studies of GFP-AR using FRAP found differences in the mobility of unliganded and antagonist-bound AR compared with that of agonist-bound AR in the general nuclear space (16, 17). Here, we have studied the dynamics of AR-chromatin interactions quantitatively when AR is bound and transcriptionally active at its target HRE. There is a significant difference between the dynamics of AR-chromatin associations in the presence of an agonist and that of an antagonist on the HRE array. For example, the t1/2 of recovery in FRAP analysis on the array is approximately sixfold lower with the AR-bicalutamide complex than with AR-DHT (Fig. 3), which correlates with the transcriptional activity elicited by these ligands (Fig. 2). Kinetic modeling of the FRAP data indicates that there is a significant increase in the rate at which the receptor dissociates from the template (koff) and a marked decrease in the HRE residence time of AR in the presence of antagonists compared with the results seen when it is bound to agonists (Table 1). These data provide important new insight into the mechanism of action of potent nonsteroidal antiandrogenic drugs: they competitively bind AR and prevent its residence on chromatin long enough to support transcriptional activation.
While assessing AR transcriptional activity by different ligands, we found that whereas all other ligands acted as expected, CPA, which was one of the first antiandrogens used in prostate cancer therapy (10), acted as an agonist in reporter assays as well as in RNA FISH analysis. As CPA is a synthetic derivative of hydroxyprogesterone, it also has progestational and antigonadotrophic properties, and it has also been shown to have agonistic properties in other cell lines (2, 12). The other partial antagonist, RU486, mainly showed antagonistic properties, which is in accordance with previous reports on RU486 function (28, 72). However, although RU486 induced transcription significantly less than the pure agonists, the FRAP recovery curve for RU486 was similar to that of the agonists (Fig. 3). Therefore, the mechanism of antiandrogen action of RU486 seems to be different from that of bicalutamide and OHF, which show a significantly faster recovery at the array. One possible explanation is that the RU486-AR complex associates more strongly with chromatin than the antagonist-AR complex but is not able to recruit the cofactors necessary for transcriptional activation. Consistent with this, RU486-bound AR cannot recruit BRM to the array in the same manner as the agonist-bound AR (Fig. 4). The reason for the delayed recovery of RU486-bound AR compared to antagonist-bound AR needs to be elucidated further.
Another surprising finding concerning the activities of ligands was determined for CPA and RU486 when they were bound to the AF-2 mutant AR-E897A. For one of the reporter constructs (-285-PB-LUC), CPA and RU486 had significant agonist activity comparable to or better than that seen with the agonists (Fig. 6C). These data indicate that partial antagonists can act as agonists, depending on the different contexts, and that this action is at least in part mediated by the nature of the hormone response element and the particular mutation in AR.
What could be the basis for significantly increased mobility of AR when it is bound to antagonists compared with the mobility seen when it is bound to agonists? In some systems, DNA binding is equally avid for AR-DHT and AR-bicalutamide complexes (see, for example, references 47 and 81). This suggests that other proteins that differentially interact with AR in chromatin in the presence of agonists compared with antagonists may be the key determinants in this regard. Another possibility is that AR N-terminal and C-terminal interactions may be involved in stabilizing the interactions with DNA (see below). This may in fact be linked to cofactor interactions, as some coactivators promote whereas some corepressors appear to repress AR N-terminal and C-terminal interactions (44). Further work is necessary to assess these possibilities.
Both our in vivo and in vitro observations showed the transient dynamic exchange of AR on its binding site and existence of a large population of bound AR molecules at steady state throughout the nucleoplasm; this supports the three-dimensional genome-scanning model for chromatin-associated proteins (60). In this model, a large population of bound molecules in the nucleoplasm at a steady state continuously samples the genome by temporary diffusional association and dissociation in order to find their binding sites. This mode of nuclear protein action has been suggested as one of the means of ensuring the availability and targeting of chromatin-associated proteins to their binding sites (59, 60).
Ligand-dependent recruitment of chromatin-remodeling complex by AR. Chromatin-remodeling complexes are involved in gene activation by several members of the nuclear receptor superfamily (see, for example, references 9, 11, 22, 54, and 64). The involvement of the chromatin-remodeling complex Swi/Snf in AR function was demonstrated by ligand-specific recruitment of the ATPase BRM by AR to the MMTV promoter (Fig. 4). Agonists and partial antagonist CPA induced the recruitment of BRM to the MMTV array, while no specific recruitment was observed for RU486 and the pure antagonists OHF and bicalutamide (Fig. 4U). This suggests that when it is agonist bound, AR recruits BRM to the array to induce chromatin remodeling and that this results in longer residence time of the receptor on the template, leading to transcriptional activation, as shown by quantitative RNA FISH, FRAP analysis, and computational kinetic modeling (Fig. 2I, 3F, and 8). In addition, active displacement of AR from MMTV chromatin, but not from naked MMTV DNA, was observed during chromatin remodeling in vitro (Fig. 5B), demonstrating the existence of dynamic interactions between the receptor and its template in vitro as well.
In addition to the ligand-dependent recruitment of BRM to the array, the wild-type AR, but not an AF-2 mutant, recruited the transcription initiation complex to the MMTV promoter indicated by the PolII recruitment. The reporter assays (Fig. 6B and C) and the RNA FISH analysis (Fig. 7I) showed that the mutant AR had retained some activity in presence of agonists, albeit extremely low activity compared with that of wild-type AR; some PolII must therefore be recruited to the array under these conditions also. However, we did not observe any PolII recruitment by the mutant AR, maybe due to very low levels of PolII that cannot be observed by IF analysis. For a more detailed analysis of the ligand-dependent recruitment of cofactors to the array, chromatin immunoprecipitation experiments can be performed as has previously been done for the prostate-specific antigen promoter and enhancer in LNCaP cells (80). We have also observed the specific recruitment of coactivators Glucocorticoid Receptor Interacting Protein 1 (GRIP1) and CREB Binding Protein (CBP) to the array by wild-type AR but not by the E897A mutant (data not shown). These data, taken together, thus link the events from binding of ligand to AR to its homing on the HREs in chromatin, to recruitment of chromatin modifying complexes and cofactors, and to the commencement of transcription.
Increased nuclear mobility of a transcriptionally impaired AR mutant. A single-residue mutant in the ligand-dependent AF-2 core of AR, AR-E897A, results in a transcriptionally impaired receptor (71). The transcriptional activity of this mutant can in part be rescued by overexpression of coactivators GRIP1 or CBP (71). In addition, histone deacetylase inhibitors can also, in part, rescue the deficiency in transcriptional potential of AR-E897A (38). These data suggested that the impaired transcriptional activity of AR-E897A may be due to its reduced ability to recruit coregulators, including chromatin remodelers with histone acetyltransferase activity.
Our data demonstrate increased nuclear mobility of GFP-AR-E897A compared to wild-type GFP-AR mobility (Fig. 7H). For all ligands tested, the recovery of GFP-AR-E897A was significantly faster than that of GFP-AR upon photobleaching, indicating that the mutant AR was less engaged on the target promoter. Consistent with this, kinetic modeling of FRAP analysis indicated that there were significant declines in slow residence time and the fraction of bound receptor that was slow in the presence of both R1881 and DHT (Table 1), indicating that there were alterations in the DNA binding properties of GFP-AR-E897A that could not be detected in vitro (71). Thus, there is good correlation between the ability of a receptor to activate transcription and its residence time on its target response element.
In our kinetic modeling experiments, we accurately fit the data for AR and AR-E897A bound to ligands and to the HRE by use of two distinct binding categories simply termed the "slow" and "fast" fractions. We do not know the functional and biological significance of these fractions, although receptors exchanging slowly with the HRE may potentially represent a more specific and a functional fraction. Further genetic and combined computational work is necessary to assess these possibilities.
The importance of intramolecular interactions in transcriptionally active AR. FRET is a powerful tool to assess inter- and intramolecular interactions in vivo (84). FRET was recently used to demonstrate that ER undergoes a conformational change in cells when associated with antiestrogens, allowing for the assessment of the efficacy of different antiestrogens (52). A similar study of AR was reported recently (66); in both cases, studies were performed of receptors in the general nucleoplasmic space without a correlation to its DNA-bound form or its in situ transcriptional activity.
The FRET analysis that we present here indicates that there are significant intramolecular interactions between the NTD and the LBD of AR in its DNA-bound and transcriptionally active states. There are also intermolecular interactions between subunits of the AR dimers that bind to HREs, but these are approximately 15% of that observed for intramolecular interactions. A mutation in the AF-2 domain (AR-E897A) significantly decreased intramolecular FRET without an effect on intermolecular FRET. Since this mutation blocks transcriptional activation by AR, these data indicate that it is the intramolecular FRET which is most important for the transactivation potential of AR (Fig. 10G). These data extend previous in vitro findings which were based on genetic and biochemical studies on transient templates with truncated versions of the receptors (27, 40) and establish NTD-LBD interactions as critical for AR function in vivo.
In summary, the data we presented demonstrate that there are dynamic interactions between AR and its target promoter in vivo which can be modulated by the recruitment of a chromatin-remodeling complex to the promoter and are strongly ligand dependent where antagonists render AR significantly more mobile compared with agonists. Furthermore, studies with a transcriptionally impaired AR demonstrate a direct link between residence time on the promoter and transcriptional activity. Finally, using FRET technology, we demonstrate the importance of intramolecular interactions in the agonist-bound AR when it is activated and bound to an HRE. Here, we have focused on the role of chromatin-remodeling proteins in receptor mobility and on the specific effect of AR ligands on these processes. Clearly, other processes are involved in nuclear mobility. For example, it has recently been shown that molecular chaperones are localized to hormone-regulated promoters (20) and may act as nuclear mobility factors (15). An ATP-dependent effect of chaperones on the mobility of GR and PR was also recently demonstrated (73) and may also apply to AR. Further investigation into these and other mechanisms will be necessary for a complete understanding of the dynamic movement of AR in living cells.
This work was supported by grants to F.S. from the Norwegian Research Council (FUGE and KREFT programs) and Norwegian Cancer Society and (in part) by the Intramural Research Program of the Center for Cancer Research, National Cancer Institute, National Institutes of Health.
Published
ahead of print on 22 December 2006. ![]()
T.I.K and P.K. contributed equally to this work. ![]()
Present
address: Merck Research Laboratories Boston, MA 02115. ![]()
Present
address: Division of Therapeutic Proteins, CDER, FDA, Bethesda, MD 20892. ![]()
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is dependent on a high-mobility-group
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-coactivator complexes in living
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21:4404-4412.This article has been cited by other articles:
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