| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Previous Article | Next Article ![]()
Molecular and Cellular Biology, May 2007, p. 3405-3416, Vol. 27, No. 9
0270-7306/07/$08.00+0 doi:10.1128/MCB.00066-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Guillermina Lozano,2,3 and
Sharon Y. R. Dent1,2*
Department of Biochemistry and Molecular Biology,1 Program in Genes and Development,2 Department of Cancer Genetics, University of Texas M. D. Anderson Cancer Center, Houston, Texas 770303
Received 12 January 2007/ Returned for modification 1 February 2007/ Accepted 14 February 2007
| ABSTRACT |
|---|
|
|
|---|
| INTRODUCTION |
|---|
|
|
|---|
Gcn5 and PCAF are assembled into large, multisubunit complexes in Saccharomyces cerevisiae, flies, and mammalian cells (4, 13, 23, 29). The components of yeast Gcn5-containing complexes (SAGA, ADA, SALSA, and SLIK) have been characterized extensively (13, 14, 34). Each complex has unique components as well as some shared Spt, Ada, and TATA box-binding protein-associated factor (TAF) proteins. In Drosophila melanogaster, Gcn5 is part of at least two complexes that contain different Ada2 homologs (20). Mammalian Gcn5 is also part of multiple, related but distinct complexes, including STAGA and TFTC (4, 23, 29) that are remarkably similar to yeast SAGA in that they contain homologs of Ada2, Ada3, Spt3, Tra1 (PAF400), and several TAFs. STAGA and TFTC contain additional factors such as SAP130, an RNA splicing factor, and DDB1, which is involved in nucleotide excision repair, indicating that these complexes regulate processes other than transcription initiation (3, 7, 24). Indeed, TFTC exhibits increased binding to UV-damaged DNA in vitro, suggesting this complex may play a direct role in sensing or repair of DNA damage in vivo (3). Damage sensing might involve the p53 tumor suppressor, since both Gcn5 (our unpublished studies) and PCAF (21) acetylate p53 in vitro. Acetylation of p53 by these HATs and by p300/CBP is increased in vivo in response to DNA damage (1, 16). However, how p53 acetylation affects DNA repair or repair checkpoints is not yet clear.
Mammalian Gcn5 contains at least three important functional domains (22). An amino-terminal domain that is not present in the yeast enzyme mediates interactions with p300 and CBP (39). The conserved bromodomain binds to acetyl-lysine moieties and may help anchor the enzyme at chromatin targets (36). Critical conserved residues in the catalytic center of Gcn5 are required for acetyl coenzyme A binding and acetyltransferase activity (reviewed in reference 22). Mutation of a single glutamate (E173) in yeast Gcn5 that acts as a general base for catalysis reduces the specific activity of recombinant Gcn5 more than 300-fold (6, 35). Mutation of this glutamate or of other conserved residues in the catalytic center cripples the ability of yeast Gcn5 to function as a coactivator in vivo, even though the mutant Gcn5 proteins are still incorporated into multisubunit complexes (6, 35). Overexpression of these mutant forms of yeast Gcn5 are dominant negative relative to the wild-type protein, probably because SAGA subunits are sequestered into inactive HAT complexes (6).
Despite extensive biochemical and structural analyses of Gcn5 complexes (22, 32), the functions of this HAT in mammalian cells are not well defined. We and others have shown that deletion of Gcn5 in mice leads to embryonic death, indicating this HAT is essential for normal development (38, 40). Gcn5 null embryos complete gastrulation but do not form somites, a neural tube, or a notochord. The lack of somite formation stems from a paucity of paraxial mesoderm, which is specified normally in the Gcn5 null embryos but is subject to increased levels of apoptosis (38). In contrast, PCAF null mice are viable with no obvious abnormalities (38, 40). Embryos deficient for both Gcn5 and PCAF die much earlier than Gcn5 single mutants, however, indicating that PCAF does contribute to some early developmental processes (38).
Our original Gcn5 null allele deleted all Gcn5 coding sequences, thereby completely abolishing Gcn5 functions (38). The early death of Gcn5 null embryos precluded determination of Gcn5 functions later in development. Here we report that deletion of the p53 tumor suppressor allows Gcn5 null embryos to survive longer. However, Gcn5/ p53/ double mutants still die by embryonic day 11.5 (E11.5) with abnormal morphology. Mouse embryos homozygous for point mutations in the predicted catalytic domain of the murine Gcn5 sequence develop much further than either Gcn5/ or Gcn5/ p53/ null mice, surviving until E16.5. Cranial neural tube closure is defective in these Gcn5 HAT mutant mice, leading to exencephaly. Collectively, our data demonstrate that Gcn5 has important functions during development that are independent of its HAT activity, but Gcn5 HAT activity is critical for cranial neural tube closure.
| MATERIALS AND METHODS |
|---|
|
|
|---|
Creation of Gcn5hat/+ mice. The Gcn5 targeting vector was linearized and electroporated into 129/SvEv-derived embryonic stem (ES) cells (AB1). Doubly resistant cells [resistant to G418 and 1-(2-deoxy-2-ß-D-arabinofuranosyl)-S- iodouracid (FLAU)] were genotyped by Southern blot analyses using probes described above. Correctly targeted ES clones were microinjected into C57BL/6J blastocysts. Chimeras were mated with wild-type C57BL/6J mice, and heterozygotes were identified among agouti progeny by Southern blot analysis of tail genomic DNA using the probes described above. Heterozygous mice were intercrossed to generate mice homozygous for the Gcn5 point mutations.
Genotyping of embryos. PCR-based genotyping was performed using primers specific for the Gcn5 wild-type allele, WL4 5'-TCACTATCTCGGATGGCTT-3' and WL5Y 5'-ACAGCTACGGCACAACTC-3' (800 bp), or the deletion allele, WL4 and WL6Y 5'-CTCTTCGCTATTACGCCAG-3' (440 bp). Dimethyl sulfoxide (6%) was added to the PCR mixtures. PCR conditions were 1 cycle of 1 min at 94°C; 5 cycles of 30 s at 94°C, 40 s at 63°C, and 1 min at 68°C; 30 cycles of 30 s at 94°C, 40 s at 55°C, and 1 min at 72°C; and 1 cycle of 7 min at 72°C.
To identify embryos carrying the Gcn5 catalytic site mutations, PCR amplification of yolk sac DNA was performed with the following primers: for E568A mutation in exon 12, 5'-CTTTCAGGGTTCCGTTCCTG-3' and 5'-TCTCACAGTAGACCAGGCTG-3' (547 bp); for D609A mutation in exon 13, 5'-ACTCAAGTGCTGAGTCTGGC-3', 5'-CCCCCAAAGGACCTTCCAAT-3' (425 bp). PCR conditions were 1 cycle of 5 min at 95°C, 35 cycles of 1 min at 95°C, 1 min at 65°C, and 1 min at 72°C; and 1 cycle of 5 min at 72°C. The PCR products were then digested with PvuI to detect the E568A mutation (yielding 333-bp and 214-bp products) or PstI to detect the D609A mutation (yielding 223-bp and 202-bp products) as shown below (see Fig. 3C).
|
HAT assays. Full-length murine Gcn5 cDNA sequences (wild type or with catalytic site mutations) were subcloned into pRSETB vector and expressed in Escherichia coli BL2l bacterial cells. His6-tagged proteins were induced by the addition of isopropyl-ß-D-thiogalactopyranoside (IPTG). HAT assays were performed as described previously (26).
Staging of mouse embryos. Mouse embryos were staged according to the time of maternal plugging and the observed number of somites in the embryos (28).
Sectioning of mouse embryos. Mouse embryos were fixed in 4% paraformaldehyde (PFA) overnight at 4°C, dehydrated in graded solutions of alcohol, cleared in xylene, and embedded in paraffin. Five- or 6-µm sections were generated from paraffin-embedded embryos using a Leica RM 2145 processor.
Section immunohistochemistry. Section immunohistochemistry was performed on 5- or 6-µm sections of paraffin-embedded E8.5 embryos using the following antibodies: CM5 (NovoCastra NCL-p53-CM5p), cleaved caspase 3 (Asp175) (Cell Signaling Technology; 1:200 dilution), or phospho-histone H3 (Ser10) (Cell Signaling Technology; 1:50 dilution), according to the manufacturer's instructions as described in the mouse-on-mouse (M.O.M.) kit from Vector Labs. High-temperature antigen unmasking was performed for all slides. Briefly, slides were placed in coplin jars containing 0.01 M sodium citrate (pH 6.0). The citrate solution and slides were brought to a boil in a microwave. The coplin jar was then removed from the microwave and allowed to cool to room temperature before slides were removed for further processing. The 3,3'-diaminobenzidine (DAB) substrate kit (Vector Labs) was used for visualization of the peroxidase substrate.
TUNEL assays. Terminal deoxynucleotidyltransferase-mediated dUTP-biotin nick end labeling (TUNEL) assays were performed on 6-µm paraffin sections using the FragEL DNA fragmentation detection kit (Oncogene). The manufacturer's TdT-FragEL detailed protocol was followed, except that the volume of enzyme was halved and the termination of labeling reaction step was abridged.
Whole-mount in situ hybridizations. Sense and antisense RNA probes were synthesized from linearized plasmids by in vitro transcription using digoxigenin-labeled dUTP (Epicenter Technologies). The cDNAs used to generate probes for Fgf8, Shh, En-1, and Twist were provided by R. Johnson (University of Texas M. D. Anderson Cancer Center [UTMDACC]) or R. Behringer (UTMDACC). Whole embryos were fixed overnight in phosphate-buffered saline (PBS) containing 4% PFA at 4°C and dehydrated in a graded methanol series prior to storage at 20°C. Whole-mount in situ hybridization was performed as described previously (38). Briefly, embryos were rehydrated in a graded methanol series and treated with 10 µg/ml proteinase K (QIAGEN). The embryos were refixed with 0.2% glutaraldehyde-4% PFA and washed in PBS containing 0.1% Tween 20 prior to hybridization overnight at 70°C. Embryos were washed three times in 5x SSC (1x SSC is 0.15 M NaCl plus 0.015 M sodium citrate)-1% sodium dodecyl sulfate (pH 4.5) at 70°C, followed by three washes in 2x SSC at 65°C. Staining was visualized using a nitroblue tetrazolium-BCIP (5-bromo-4-chloro-3-indolylphosphate) (Roche) or BM purple (Roche) substrate.
Preparation of mouse embryos for scanning electron microscopy. Freshly dissected embryos were treated with a fixative containing 3% glutaraldehyde plus 2% PFA in 0.1 M cacodylate buffer, pH 7.3, for at least 1 h at ambient temperature. Embryos were then washed with 0.1 M cacodylate buffer (pH 7.3) three times for 5 min each time. The embryos were then fixed with 1% cacodylate-buffered osmium tetroxide for 1 h and washed with distilled water three times for 5 min each time. The embryos were sequentially treated with Millipore-filtered aqueous 1% thiocarbohydrazide for 10 min, aqueous 1% osmium tetroxide for 10 min, 1% aqueous tannic acid for 30 min, and 1% aqueous uranyl acetate overnight in the dark. The embryos were rinsed thoroughly with distilled water after every treatment to prevent any carryover of reagents. The samples were then dehydrated with a graded series of increasing concentrations of ethanol for 5 min each. The embryos were then transferred to graded series of increasing concentrations of hexamethyldisilazane (HMDS) for 5 min each and air dried overnight. Samples were mounted on double-stick carbon tabs (Ted Pella, Inc., Redding, CA), which had been previously mounted onto aluminum specimen mounts (Electron Microscopy Sciences, Ft. Washington, PA). The samples were then coated under vacuum using a Balzer MED 010 evaporator (Technotrade International, Manchester, NH) with platinum alloy for a thickness of 25 nm and then immediately flash carbon coated under vacuum. The samples were transferred to a desiccator until examination in a JSM-5900 scanning electron microscope (JEOL, USA, Inc., Peabody, MA) at an accelerating voltage of 5 kV.
Isolation of primary MEFs. Brains, limbs, and internal organs were removed from freshly dissected E13.5 embryos, and the remaining tissues were transferred to a six-well plate, rinsed in 4 ml of PBS, and then transferred to new wells containing 1 ml of 0.25% (wt/vol) trypsin. Embryos were minced with a sterile razor blade and homogenized by repeated pipetting. After 10 min of incubation at 37°C, the cells were pipetted again to further separate clumps, and then 2 ml of mouse embryo fibroblast (MEF) medium (Dulbecco modified Eagle medium with 10% heat-inactivated fetal bovine serum, 2 mM L-glutamine, 100 U/ml penicillin, 100 µg/ml streptomycin, and 0.1 mM ß-mercaptoethanol) was immediately added to the well, and the cell suspension was divided among three 10-cm gelatinized culture plates. The medium was changed the next day, and the cells were grown to confluence at 37°C (passage 0) prior to splitting the cells 1:3 into fresh medium. After passage 6, cells were split 1:2. For the growth curve analyses shown below (see Fig. 7B), third passage MEFs were seeded at 1 x 105 cells per well of a six-well plate on day 0. The cells in duplicate plates were trypsinized, washed in PBS, and then stained in 0.4% trypan blue at the indicated time points. Trypan blue-negative cells were counted using a hemacytometer.
|
Annexin V-FITC staining of MEFs. MEFs were trypsinized, washed twice with cold PBS, and counted using a hemacytometer. Cells (1 x 106) were collected and then resuspended in binding buffer (annexin V-FITC apoptosis detection kit 1; BD Biosciences). Cells were vortexed gently, and 100 µl of the solution (1 x 105 cells) was transferred to a 5-ml tube, followed by addition of 5 µl of annexin V- fluorescein isothiocyanate (FITC) and 5 µl of PI. The cells were gently vortexed again and incubated for 15 min at room temperature in the dark. Binding buffer (400 µl) was added to each tube, and the stained cells were subjected to flow cytometry.
Preparation of MEF lysates and immunoblots. Whole-cell lysates were prepared by lysing MEFs directly in Laemmli gel loading buffer with protease inhibitors, followed by sonication on ice three times for 3 seconds each time and centrifugation at 12,000 x g for 30 min at 4°C in a microcentrifuge to remove cellular debris. Nuclear extracts were prepared by lysing MEFs in buffer A (10 mM Tris, 1.5 mM MgCl2, 10 mM HCl. 0.5 mM dithiothreitol, and 0.2 mM phenylmethylsulfonyl fluoride). The lysate was held on ice for 10 min and homogenized 10 times. The nuclear pellet was collected by centrifugation as described above and then resuspended in buffer C (20 mM Tris, 0.42% NaCl, 25% glycerol, 1.5 mM MgCl2, 0.2 mM EDTA, 0.5 mM dithiothreitol, and 0.2 mM phenylmethylsulfonyl fluoride). After 30 min of rotation at 4°C, the extract was cleared by centrifugation as described above, and the supernatant (the nuclear extract) was removed and placed in a fresh tube. Proteins in whole-cell lysates or nuclear extracts were resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes. Histone H3 was detected using antisera specific for H3 acetylated at lysine 9 (K9) and lysine 18 (K18) (1:1,000 dilution [12]), acetylated at K14 (1:1,000; Upstate) or the C terminus of H3 (1:2,000 dilution; Abcam). Histone H4 was detected using an antisera specific for K12 acetylated isoforms (1:1,000; Upstate) or total H4 (1:2,000; Upstate). The anti-Gcn5 antiserum used in these experiments was from BioLegend (1:500 dilution), and the anti-ß-actin antiserum was from Sigma (1:4,000 dilution).
| RESULTS |
|---|
|
|
|---|
|
|
|
Gcn5 HAT mutations cause embryonic lethality. To determine whether Gcn5 acetyltransferase activity is required for its functions during mouse development, we created mice bearing mutations in the Gcn5 catalytic center. We generated a gene replacement vector for Gcn5 in which the critical catalytic glutamate (E568; equivalent to E173 in yeast Gcn5) (22) as well as a conserved aspartate (D608) were converted to alanine (Fig. 3A). ES cell clones bearing the mutant allele integrated into the Gcn5 locus were identified by Southern blotting and PCR genotyping and were then used to generate mice heterozygous for the Gcn5 HAT mutation (Gcn5hat/+) (Fig. 3B and C).
Gcn5hat/+ mice appeared normal and were fertile. However, no live homozygous Gcn5hat/hat mice were identified among 237 progeny of Gcn5hat/+ intercrosses (Table 2), suggesting that loss of Gcn5 HAT activity causes embryonic lethality. Indeed, Gcn5hat/hat homozygotes were observed at expected frequencies at E8.5 to E11.5 but were found at reduced frequency at most later times of gestation (Table 2).
|
|
|
|
Neural tube defects (NTDs) and exencephaly in Gcn5hat/hat embryos. Gcn5hat/hat embryos exhibited defects in neural tube closure early in development and exencephaly at later times (Fig. 5C to G). Neural tube closure normally begins at three sites at E8.5. The neural folds lift and fuse first at the hindbrain/cervical boundary (site 1), followed by fusions at the midbrain/forebrain boundary (site 2), and finally, fusion at the rostral end of the neural tube (site 3) (10). Fusion then continues from these sites, leading to complete neural tube closure by E9.5. The neural folds of E9.5 Gcn5hat/hat embryos remained open, despite the extensive posterior development of these embryos (Fig. 5C). Exencephaly was seen in Gcn5hat/hat embryos from E11.5 onwards (Fig. 5D to G) and was quite dramatic in some embryos (e.g., the rightmost embryo in Fig. 5F).
To further define the nature of the NTDs in Gcn5hat/hat embryos, we performed scanning electron microscopy on E9.5 embryos. As expected, neural tube closure was completed in wild-type littermates at this time point (Fig. 8A, left panel), but the neural tube remained open from the hindbrain-cervical boundary (Fig. 8A, right panel) rostrally towards the forebrain in Gcn5hat/hat embryos (Fig. 5C to G; also data not shown). Normal neural tube fusion was achieved along the spinal region of the Gcn5hat/hat embryos.
|
Expression of mesodermal and neural markers in Gcn5hat/hat embryos. The cranial NTDs in the Gcn5hat/hat embryos may reflect a failure of the neural folds to elevate in the midbrain region, thereby preventing fusion (10). Alternatively, cranial NTDs might arise from defective development of head mesenchyme. Others have shown that decreased or increased numbers of head mesenchyme cells around the cranial neural tube lead to neural tube defects (8, 44, 45). In addition, sonic hedge hog (Shh) signaling is required for proper bending of the neural folds to form the neural tube (10, 11). To determine whether any of these steps is affected by loss of Gcn5 HAT activity, we compared the expression of key marker genes for these processes in Gcn5hat/hat embryos to that in their wild-type or heterozygous littermates.
Whole-mount in situ hybridizations indicate that expression of Tcf15 occurs at the right time and place in Gcn5hat/hat embryos (Fig. 9A). Together with our data above demonstrating normal expression of Fgf8 and Dll in Gcn5/ p53/ embryos (Fig. 2A and B), these findings indicate that neither Gcn5 expression nor HAT activity is required for presomitic mesoderm formation. Levels and location of Twist expression also appeared normal in E9.0 Gcn5hat/hat embryos (Fig. 9B), indicating that head mesenchyme is formed properly in the absence of Gcn5 HAT activity. En-1 expression was evident in the midbrain region of Gcn5hat/hat embryos around E9.0 (Fig. 9C). Expression of Shh occurred along the midline of the mutant animals, as is observed in wild-type littermates (Fig. 9D). Otx2 was also expressed normally in the anterior and midbrain regions of E9.5 Gcn5hat/hat embryos (Fig. 9E). These data, then, indicate that the NTDs observed in the Gcn5hat/hat embryos are not due to a failure in development of head mesenchyme or Shh expression. These data also indicate that Gcn5 HAT activity is not required for anterior, midbrain, or hindbrain specification. The NTDs in the Gcn5hat/hat embryos must reflect deficiency in another process required for neural fold elevation and neural tube fusion.
|
| DISCUSSION |
|---|
|
|
|---|
The phenotype of our Gcn5/ p53/ embryos was somewhat reminiscent of that reported by Yamauchi et al. for mouse mutants lacking Gcn5 C-terminal sequences, which encode the HAT domain and bromodomain (40). Mice homozygous for that Gcn5 allele were smaller than their wild-type or heterozygous littermates and appeared delayed in development, just as we see in the Gcn5/ p53/ double null mutants.
The fact that those mutant embryos and our original Gcn5 null embryos die much earlier than our Gcn5hat/hat embryos indicates that Gcn5 has important developmental functions that are independent of its acetyltransferase activity. Otherwise, the catalytic site mutations would render a phenotype just as severe as that of Gcn5 deletion. Gcn5-containing complexes in mice likely contain multiple functional modules, as they do in yeast (2, 19, 37). Nonenzymatic proteins likely contribute essential functions to the complexes as well. In flies, for example, two Ada2 variants are assembled into separate Gcn5-containing complexes that have distinct roles during development (20). The complete absence of the Gcn5 protein in our Gcn5/ mice (38) and the presence of (at most) a truncated protein in mice expressing the Gcn5 allele of Yamauchi et al. (40) might affect the integrity of all Gcn5-containing complexes in these mutant embryos. In contrast, complex integrity is predicted to be intact in our Gcn5hat/hat mice on the basis of the precedent of catalytically inactive Gcn5 proteins in yeast (6, 35). We have not yet tested this prediction, as we do not have immortalized cell lines expressing this allele, and biochemical purification would be difficult, if not impossible, from the limited amounts of embryonic material or primary MEFs that we could obtain. The fact that the Gcn5hat/hat embryos survive until E13.5 to E16.5, though, supports the idea that this allele preserves important Gcn5 complex functions. Interestingly, overexpression of catalytically inactive forms of Gcn5 in yeast caused dominant-negative effects, likely due to competition of the mutant and wild-type forms of the proteins for assembly into SAGA or other Gcn5-containing complexes. We have not observed any dominant-negative effects of the mutant allele in our Gcn5hat/+ mice, which likely reflects that normal expression (i.e., not overexpression) of the mutant allele in these mutant mice.
Gcn5 is expressed ubiquitously in early mouse embryos, with the exception of the developing heart (38). It is somewhat surprising, then, that developmental defects in the Gcn5hat/hat mutants appear to be limited to neural tissues. The normal development of other tissues may reflect Gcn5 redundancy with PCAF or overlapping functions with p300. PCAF null mice do not exhibit any abnormal phenotypes, so PCAF functions are not normally essential during development (38, 40). However, Gcn5/ PCAF/ double mutant embryos die much earlier than Gcn5/ single mutant embryos do, indicating PCAF shares some redundant functions with Gcn5 during development (38). Similarly, the phenotype of mice heterozygous for null alleles of both Gcn5 and p300 exhibit decreased viability relative to mice heterozygous for either single mutation, indicating that Gcn5 and p300 share some functions during embryogenesis (31). Mouse embryos with only one functional p300 allele exhibit an increased frequency of NTDs, indicating this HAT is also important for neural tube closure (42). Interestingly, mutations in the acetyltransferase (AT) domain of p300 are dominant, unlike our Gcn5 AT domain mutations. The presence of a single p300 AT mutant allele results in defective development of the lungs, cardiovascular system, and small intestine in mice (33). None of these organs are affected by loss of Gcn5 AT activity. Although these HATs physically interact and share some functions during development, they clearly have a number of distinct functions as well.
Neural tube closure is a complex and multistep process that involves lifting, bending, and fusion of the neural folds (10). Alterations in tissue proliferation or in cell survival affect this process, but our data indicate that Gcn5hat/hat fibroblasts divide somewhat slowly in vitro and are not subject to increased apoptosis. It seems likely, then, that Gcn5 affects neural tube closure through effects on cell growth and/or gene transcription. Gcn5 functions as a transcriptional coactivator, and although we found that Gcn5 HAT activity is not required for expression of Twist, En-1, Shh, or Otx2, it may regulate expression of one or more of the
100 other genes required for proper neural tube closure (10, 45). This possibility will be addressed in future studies.
Interestingly, another subunit of Gcn5-containing complexes, Ataxin-7, is also implicated in neural functions (17, 18, 25). The Sca7 gene that encodes Ataxin-7 is subject to polyglutamine (poly-Q) expansions in humans, giving rise to spinocerebellar ataxia (15). Mouse models of poly-Q expansions of Sca7 exhibit many phenotypes similar to those found in the human disease, including ataxia and retinal defects (15, 43). Current models suggest that the mutant proteins have adverse effects on transcriptional regulation of downstream target genes. Recent work indicates that such defects are associated with increased histone acetylation (17), but other studies indicate that poly-Q expanded Ataxin-7 proteins inhibit Gcn5 functions (25, 30). Our current findings support the importance of Gcn5 acetyltransferase activity in normal neural development. The mutant Gcn5 alleles that we have generated will allow us to determine directly whether decreased Gcn5 protein levels or catalytic activity modulates the Sca7 poly-Q mutant phenotype in mice.
| ACKNOWLEDGMENTS |
|---|
Y.A.E. was supported by a Sowell-Huggins Fellowship. This work was supported by a grant from the NIH (GM067718) to S.Y.R.D. DNA sequencing, flow cytometry, and scanning electron microscopy were performed at UTMDACC core facilities supported by the UTMDACC Cancer Center Support Grant (CA16672) from the NCI.
| FOOTNOTES |
|---|
Published ahead of print on 26 February 2007. ![]()
Present address: Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892. ![]()
| REFERENCES |
|---|
|
|
|---|
2. Brand, M., C. Leurent, V. Mallouh, L. Tora, and P. Schultz. 1999. Three-dimensional structures of the TAFII-containing complexes TFIID and TFTC. Science 286:2151-2153.
3. Brand, M., J. G. Moggs, M. Oulad-Abdelghani, F. Lejeune, F. J. Dilworth, J. Stevenin, G. Almouzni, and L. Tora. 2001. UV-damaged DNA-binding protein in the TFTC complex links DNA damage recognition to nucleosome acetylation. EMBO J. 20:3187-3196.[CrossRef][Medline]
4. Brand, M., K. Yamamoto, A. Staub, and L. Tora. 1999. Identification of TATA-binding protein-free TAFII-containing complex subunits suggests a role in nucleosome acetylation and signal transduction. J. Biol. Chem. 274:18285-18289.
5. Brownell, J. E., J. Zhou, T. Ranalli, R. Kobayashi, D. G. Edmondson, S. Y. Roth, and C. D. Allis. 1996. Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation. Cell 84:843-851.[CrossRef][Medline]
6. Candau, R., J. Zhou, C. D. Allis, and S. L. Berger. 1997. Histone acetyltransferase activity and interaction with ADA2 are critical for GCN5 function in vivo. EMBO J. 16:555-565.[CrossRef][Medline]
7. Cavusoglu, N., M. Brand, L. Tora, and A. Van Dorsselaer. 2003. Novel subunits of the TATA binding protein free TAFII-containing transcription complex identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry following one-dimensional gel electrophoresis. Proteomics 3:217-223.[CrossRef][Medline]
8. Chen, Z. F., and R. R. Behringer. 1995. Twist is required in head mesenchyme for cranial neural tube morphogenesis. Genes Dev. 9:686-699.
9. Ciurciu, A., O. Komonyi, T. Pankotai, and I. M. Boros. 2006. The Drosophila histone acetyltransferase Gcn5 and transcriptional adaptor Ada2a are involved in nucleosomal histone H4 acetylation. Mol. Cell. Biol. 26:9413-9423.
10. Copp, A. J., N. D. Greene, and J. N. Murdoch. 2003. The genetic basis of mammalian neurulation. Nat. Rev. Genet. 4:784-793.[CrossRef][Medline]
11. Echelard, Y., D. J. Epstein, B. St-Jacques, L. Shen, J. Mohler, J. A. McMahon, and A. P. McMahon. 1993. Sonic hedgehog, a member of a family of putative signaling molecules, is implicated in the regulation of CNS polarity. Cell 75:1417-1430.[CrossRef][Medline]
12. Edmondson, D. G., J. K. Davie, J. Zhou, B. Mirnikjoo, K. Tatchell, and S. Y. Dent. 2002. Site-specific loss of acetylation upon phosphorylation of histone H3. J. Biol. Chem. 277:29496-29502.
13. Grant, P. A., L. Duggan, J. Cote, S. M. Roberts, J. E. Brownell, R. Candau, R. Ohba, T. Owen-Hughes, C. D. Allis, F. Winston, S. L. Berger, and J. L. Workman. 1997. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes Dev. 11:1640-1650.
14. Grant, P. A., D. Schieltz, M. G. Pray-Grant, J. R. Yates III, and J. L. Workman. 1998. The ATM-related cofactor Tra1 is a component of the purified SAGA complex. Mol. Cell 2:863-867.[CrossRef][Medline]
15. Grote, S. K., and A. R. La Spada. 2003. Insights into the molecular basis of polyglutamine neurodegeneration from studies of a spinocerebellar ataxia type 7 mouse model. Cytogenet. Genome Res. 100:164-174.[CrossRef][Medline]
16. Gu, W., and R. G. Roeder. 1997. Activation of p53 sequence-specific DNA binding by acetylation of the p53 C-terminal domain. Cell 90:595-606.[CrossRef][Medline]
17. Helmlinger, D., S. Hardy, G. Abou-Sleymane, A. Eberlin, A. B. Bowman, A. Gansmuller, S. Picaud, H. Y. Zoghbi, Y. Trottier, L. Tora, and D. Devys. 2006. Glutamine-expanded ataxin-7 alters TFTC/STAGA recruitment and chromatin structure leading to photoreceptor dysfunction. PLoS Biol. 4:e67.[CrossRef][Medline]
18. Helmlinger, D., S. Hardy, S. Sasorith, F. Klein, F. Robert, C. Weber, L. Miguet, N. Potier, A. Van-Dorsselaer, J. M. Wurtz, J. L. Mandel, L. Tora, and D. Devys. 2004. Ataxin-7 is a subunit of GCN5 histone acetyltransferase-containing complexes. Hum. Mol. Genet. 13:1257-1265.
19. Ingvarsdottir, K., N. J. Krogan, N. C. Emre, A. Wyce, N. J. Thompson, A. Emili, T. R. Hughes, J. F. Greenblatt, and S. L. Berger. 2005. H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex. Mol. Cell. Biol. 25:1162-1172.
20. Kusch, T., S. Guelman, S. M. Abmayr, and J. L. Workman. 2003. Two Drosophila Ada2 homologues function in different multiprotein complexes. Mol. Cell. Biol. 23:3305-3319.
21. Liu, L., D. M. Scolnick, R. C. Trievel, H. B. Zhang, R. Marmorstein, T. D. Halazonetis, and S. L. Berger. 1999. p53 sites acetylated in vitro by PCAF and p300 are acetylated in vivo in response to DNA damage. Mol. Cell. Biol. 19:1202-1209.
22. Marmorstein, R., and S. Y. Roth. 2001. Histone acetyltransferases: function, structure, and catalysis. Curr. Opin. Genet. Dev. 11:155-161.[CrossRef][Medline]
23. Martinez, E., T. K. Kundu, J. Fu, and R. G. Roeder. 1998. A human SPT3-TAFII31-GCN5-L acetylase complex distinct from transcription factor IID. J. Biol. Chem. 273:23781-23785. (Erratum, 273:27755.)
24. Martinez, E., V. B. Palhan, A. Tjernberg, E. S. Lymar, A. M. Gamper, T. K. Kundu, B. T. Chait, and R. G. Roeder. 2001. Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo. Mol. Cell. Biol. 21:6782-6795.
25. McMahon, S. J., M. G. Pray-Grant, D. Schieltz, J. R. Yates IIII, and P. A. Grant. 2005. Polyglutamine-expanded spinocerebellar ataxia-7 protein disrupts normal SAGA and SLIK histone acetyltransferase activity. Proc. Natl. Acad. Sci. USA 102:8478-8482.
26. Mizzen, C. A., J. E. Brownell, R. G. Cook, and C. D. Allis. 1999. Histone acetyltransferases: preparation of substrates and assay procedures. Methods Enzymol. 304:675-696.[Medline]
27. Montes de Oca Luna, R., D. S. Wagner, and G. Lozano. 1995. Rescue of early embryonic lethality in mdm2-deficient mice by deletion of p53. Nature 378:203-206.[CrossRef][Medline]
28. Nagy, A., M. Gertsenstein, K. Vintersten, and R. R. Behringer. 2003. Manipulating the mouse embryo: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
29. Ogryzko, V. V., T. Kotani, X. Zhang, R. L. Schlitz, T. Howard, X. J. Yang, B. H. Howard, J. Qin, and Y. Nakatani. 1998. Histone-like TAFs within the PCAF histone acetylase complex. Cell 94:35-44.[CrossRef][Medline]
30. Palhan, V. B., S. Chen, G. H. Peng, A. Tjernberg, A. M. Gamper, Y. Fan, B. T. Chait, A. R. La Spada, and R. G. Roeder. 2005. Polyglutamine-expanded ataxin-7 inhibits STAGA histone acetyltransferase activity to produce retinal degeneration. Proc. Natl. Acad. Sci. USA 102:8472-8477.
31. Phan, H. M., A. W. Xu, C. Coco, G. Srajer, S. Wyszomierski, Y. A. Evrard, R. Eckner, and S. Y. Dent. 2005. GCN5 and p300 share essential functions during early embryogenesis. Dev. Dyn. 233:1337-1347.[CrossRef][Medline]
32. Roth, S. Y., J. M. Denu, and C. D. Allis. 2001. Histone acetyltransferases. Annu. Rev. Biochem. 70:81-120.[CrossRef][Medline]
33. Shikama, N., W. Lutz, R. Kretzschmar, N. Sauter, J. F. Roth, S. Marino, J. Wittwer, A. Scheidweiler, and R. Eckner. 2003. Essential function of p300 acetyltransferase activity in heart, lung and small intestine formation. EMBO J. 22:5175-5185.[CrossRef][Medline]
34. Sterner, D. E., P. A. Grant, S. M. Roberts, L. J. Duggan, R. Belotserkovskaya, L. A. Pacella, F. Winston, J. L. Workman, and S. L. Berger. 1999. Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. Mol. Cell. Biol. 19:86-98.
35. Wang, L., C. Mizzen, C. Ying, R. Candau, N. Barlev, J. Brownell, C. D. Allis, and S. L. Berger. 1997. Histone acetyltransferase activity is conserved between yeast and human GCN5 and is required for complementation of growth and transcriptional activation. Mol. Cell. Biol. 17:519-527.[Abstract]
36. Winston, F., and C. D. Allis. 1999. The bromodomain: a chromatin-targeting module? Nat. Struct. Biol. 6:601-604.[CrossRef][Medline]
37. Wu, P. Y., C. Ruhlmann, F. Winston, and P. Schultz. 2004. Molecular architecture of the S. cerevisiae SAGA complex. Mol. Cell 15:199-208.[CrossRef][Medline]
38. Xu, W., D. G. Edmondson, Y. Evrard, M. Wakamiya, R. R. Behringer, and S. Y. Roth. 2000. Loss of GCN5 leads to increased apoptosis and mesodermal defects during mouse development. Nature Genet. 26:229-232.[CrossRef][Medline]
39. Xu, W., D. G. Edmondson, and S. Y. Roth. 1998. Mammalian GCN5 and P/CAF acetyltransferases share homologous amino-terminal domains important for the recognition of nucleosomal substrates. Mol. Cell. Biol. 18:5659-5669.
40. Yamauchi, T., J. Yamauchi, T. Kuwata, T. Tamura, T. Yamashita, N. Bae, H. Westphal, K. Ozato, and Y. Nakatani. 2000. Distinct but overlapping roles of the histone acetylase PCAF and of the closely related PCAF-B/GCN5 in mouse embryogenesis. Proc. Natl. Acad. Sci. USA 97:11303-11306.
41. Yang, X.-J., V. V. Ogryzko, J.-I. Nishikawa, B. H. Howard, and Y. Nakatani. 1996. A p300/CBP associated factor that competes with the adenoviral oncoprotein E1A. Nature 382:319-324.[CrossRef][Medline]
42. Yao, T. P., S. P. Oh, M. Fuchs, N. D. Zhou, L. E. Ch'ng, D. Newsome, R. T. Bronson, E. Li, D. M. Livingston, and R. Eckner. 1998. Gene dosage-dependent embryonic development and proliferation defects in mice lacking the transcriptional integrator p300. Cell 93:361-372.[CrossRef][Medline]
43. Yoo, S. Y., M. E. Pennesi, E. J. Weeber, B. Xu, R. Atkinson, S. Chen, D. L. Armstrong, S. M. Wu, J. D. Sweatt, and H. Y. Zoghbi. 2003. SCA7 knockin mice model human SCA7 and reveal gradual accumulation of mutant ataxin-7 in neurons and abnormalities in short-term plasticity. Neuron 37:383-401.[CrossRef][Medline]
44. Zhao, Q., R. R. Behringer, and B. de Crombrugghe. 1996. Prenatal folic acid treatment suppresses acrania and meroanencephaly in mice mutant for the Cart1 homeobox gene. Nat. Genet. 13:275-283.[CrossRef][Medline]
45. Zohn, I. E., K. V. Anderson, and L. Niswander. 2005. Using genomewide mutagenesis screens to identify the genes required for neural tube closure in the mouse. Birth Defects Res. Part A 73:583-590.[CrossRef]
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||