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Molecular and Cellular Biology, January 2008, p. 258-268, Vol. 28, No. 1
0270-7306/08/$08.00+0 doi:10.1128/MCB.01536-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Shulin Zhang,2
Karen Tsuchiya,1
Russell Moser,1
Kay E. Gurley,1
Gary Longton,1
Johan deBoer,2 and
Christopher J. Kemp1*
Fred Hutchinson Cancer Research Center, Seattle, Washington,1 University of Victoria, Victoria, British Columbia, Canada2
Received 22 August 2007/ Returned for modification 19 September 2007/ Accepted 9 October 2007
| ABSTRACT |
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| INTRODUCTION |
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These observations hinted that p27 plays a fundamental role in tumor suppression, although a cause-and-effect relationship was difficult to establish because somatic mutations in the CDKN1B gene, encoding p27, are rare in tumors (16, 30, 31). Studies of the p27 knockout mouse clearly showed that p27 is a potent tumor suppressor in multiple tissues, with a particularly strong effect within the gastrointestinal (GI) tract. Although spontaneous GI tumors are rare in p27-deficient mice fed a standard diet, these mice are highly predisposed to adenomas and adenocarcinomas throughout the small intestine and colon when treated with the genotoxic carcinogens N-ethyl-N-nitrosourea (ENU), gamma irradiation, and 1,2-dimethylhydrazine (12, 28, 47).
Two primary, and sometimes overlapping, functions of tumor suppressors are inhibition of proliferation and maintenance of genetic integrity. Previously, we demonstrated that p27 deficiency resulted in an increased mitotic index (MI) in GI tumors (28), indicating that p27 functions, at least in part, to inhibit proliferation of tumor cells. However, other studies show a lack of correlation between p27 levels and proliferation, suggesting that there may be more than one mechanism of tumor suppression by p27 (24, 25, 39, 42). Here we investigated the role of p27 in maintenance of genetic integrity using the same target tissue, the GI tract, and the same agents, ENU and gamma radiation, used previously to induce tumors.
We found that p27 deficiency significantly increased both large- and small-scale genetic lesions in response to ENU and low doses of gamma irradiation using three separate genotoxic assays (the Big Blue mutagenicity assay, analysis of chromatid gaps and breaks, and the micronucleus assay). p27 deficiency also impaired G2/M arrest in the crypt progenitor cells of the GI epithelium following genotoxic exposure. Together, these results suggest that the susceptibility of p27-deficient mice to genotoxic agents can be at least partially attributed to an increase in genotoxin-induced mutation frequency (MF) due to a defect in G2/M checkpoint initiation.
| MATERIALS AND METHODS |
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Somatic mutation assay.
The p27/lacI double-transgenic mice were generated by crossing Big Blue/lacI transgenic C57BL/6 mice and p27+/– C57BL/6 mice. The resulting p27+/+, p27+/–, and p27–/– lacI mice were genotyped as previously described (13, 23). Five to seven mice were assigned to each treatment group. At the age of 7 to 9 weeks, mice were treated with ENU (Sigma-Aldrich Co.) at a dose of 150 mg/kg (dissolved in 66.7 mM phosphate-buffered saline [PBS] solution) by a single intraperitoneal injection. Control mice were injected with PBS solution only. Three weeks after ENU treatment, the mice were sacrificed and colons were excised, rinsed with sterile PBS, flash frozen in liquid nitrogen, and stored at –80°C until needed. Genomic DNA was isolated as previously described (41). lacI transgenes were recovered from purified mouse chromosomal DNA by in vitro
packaging (Stratagene, La Jolla, CA). Packaged phage were plated on an SCS-8 bacterial lawn in the presence of 5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside (X-Gal). Phage with a mutated lacI gene yield blue plaques, while wild-type phage form colorless plaques. lacI mutants were picked and purified by replating at low density. A 1.5-kb lacI-containing fragment was amplified by PCR (11), and the mutation specificity was determined by direct sequencing. The MF was calculated as the ratio of the number of independent mutants to the total number of plaques screened. MF data are presented with standard error of the mean (SEM) and were analyzed using COCHARM (created by Troy Johnson, Procter & Gamble, Cincinnati, OH), a computer program that executes the general Cochran-Armitage test (4). Fisher's exact test was used for the comparison of mutation changes, and the Bonferonni correction was used when comparing data from more than two groups.
Chromatid gap/break assay. Spleens were removed from adult mice of all three p27 genotypes and placed in 1.5 ml of RPMI 1640, and cells were teased out of the spleen using sterile, bent 23-gauge needles. Spleen cell pellets were equally divided into thirds and cultured in T25 flasks with 5 ml RPMI 1640 containing 10% fetal bovine serum (FBS) and 40 µg/ml lipopolysaccharide (Sigma, L4391). Cells were cultured at 37°C for 46 h, followed by treatment with either 0, 0.6, or 1.2 Gy gamma irradiation. After irradiation, cells were incubated for an additional 3 h at 37°C, with the final hour of incubation in the presence of 0.04 µg/ml KaryoMAX Colcemid (Invitrogen). Cells were harvested for metaphase chromosome preparations using 0.075 M KCl (15 min at 37°C), followed by three changes of 3:1 methanol-acetic acid fixative. Slides were prepared and either G banded or solid stained using Wright stain. Fifty to 150 cells from each culture were counted for chromatid gaps and breaks by a blinded scorer and pooled for statistical analysis. Two or three mice per p27 genotype were analyzed in two separate experiments. Cells were not used for scoring if they had overlapping chromosomes, if debris was covering chromosomes, or if they were tetraploid.
Micronucleus assay. Peripheral blood samples were obtained from seven to nine mice per p27 genotype by retroorbital bleeding immediately prior to, as well as 24 h and 48 h following, one dose of whole-body 0.6 Gy IR at the age of 8 to 12 weeks. Blood samples were fixed according to the manufacturer's specifications and processed by flow cytometry at Litron Laboratories. The micronucleus frequencies of high CD71+ micronucleated reticulocytes were assayed.
Histopathology and immunohistochemistry. The small intestine and colon were removed, fixed in 10% neutral buffered formalin for 4 to 6 h, and embedded in paraffin. After high-temperature antigen retrieval in 10 mM citrate buffer, pH 6.0, 5-mm sections were stained for p27 (mouse monoclonal antibody; Neomarkers, Fremont, CA), phospho-histone H3 (Ser 10) (Cell Signaling Tech 9701) for 1 h. Standard avidin-biotin peroxidase complex (ABC) techniques were used for primary antibody detection (biotinylated goat anti-rabbit antibody [Vector Labs Inc., Burlingame, CA]; streptavidin ABC [DAKO Corp., Carpinteria, CA]). The slides were developed in 3,3'-diaminobenzidine-NiCl and then counterstained with methyl green. Controls included no primary antibody and/or normal rabbit serum and tissues from p27–/– mice. Bromodeoxyuridine labeling was done as described previously (28).
Cell cycle analysis. To generate mouse embryonic fibroblasts (MEFs), p27+/– mice were crossed and embryos were dissected at 12.5 to 13.5 days after detection of vaginal plugs. The head and internal organs were removed, and the embryos were minced and incubated in 0.05% trypsin for 5 min. The cells were resuspended in Dulbecco modified Eagle medium supplemented with 10% FBS. After centrifugation, the supernatant was discarded and the cell suspension from each embryo was cultivated on a 10-cm dish in 10 ml Dulbecco modified Eagle medium with 10% FBS until confluence was reached. After this time, the cells were treated with trypsin, counted, and plated at 0.5 x 106 cells per 10-cm dish or at 0.025 x 106 cells per well in a LabtekII chamber slide (Nalge Nunc International). Immortalized MEF lines were prepared according to the NIH 3T3 protocol and were a generous gift from A. Besson and J. Roberts. Adherent primary MEFs were irradiated with 5 Gy at passages 1 to 5, with all p27 genotypes matched for passage within a given experiment. The MI of MEFs was determined using H&E staining of chamber slides in three to five independent experiments. At least three different MEF lines per p27 genotype were analyzed before and after IR. The results shown are expressed as percentages of the unirradiated MI. For synchronization experiments, cells were grown to confluence and held for 48 h before passage into 5 µg/ml aphidicolin. After 16 h, the cells were washed twice with PBS and released into fresh medium without aphidicolin. For fluorescence-activated cell sorter (FACS) analysis, 0.5 x 106 cells were fixed in 70% ethanol at –20°C for 1 h, washed twice with 2% fetal calf serum-PBS, and stained with 25 µg/ml propidium iodide and 1 mg/ml RNase A in 2% fetal calf serum-PBS overnight at 4°C. Samples were acquired on a FACScan for DNA content and analyzed using Cellquest software (Becton Dickinson, Mountain View, CA) and FlowJo software (TreeStar Inc., Ashland, OR). Fifty percent of cells entered S phase by 4 h after release (see Fig. 4). Therefore, cells were irradiated (5 Gy) at 6 h after release, when a large percentage would be in S/G2, and then collected 2 h later for mitotic and kinase assays. For analysis of phospho-H2A.X, cells were synchronized as described above and seeded in four-chamber slides at 0.025 x 106 cells per well in a LabtekII chamber slide (Nalge Nunc International). At appropriate time points, cells were fixed with 95% ethanol and 5% acetic acid for 10 min, followed by a 10-min fixation/permeation with 1% formaldehyde and 0.25% Triton X-100. Slides were blocked in 3% BSA-1x PBS for 30 min at room temperature and then incubated with anti-phospho-H2A.X (ser139)-fluorescein isothiocyanate conjugate (Upstate) according to the manufacturer's specifications overnight at 4°C. Slides were washed five times with PBS and coverslipped with mounting medium containing DAPI (4',6'-diamidino-2-phenylindole) (Vector Laboratories). Images were visualized using a Nikon E800 and acquired using Metamorph software (Universal Imaging Corp.). The experiment was run in triplicate, and all images for a given experiment were acquired using the same exposure, range, and gamma settings.
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-32P]ATP (Perkin-Elmer Life Sciences, BLU-502A), and 2.0 µg histone H1 (Roche, 1004875) at 30°C for 30 min. Reactions were terminated by the addition of 10 µl of 4x sodium dodecyl sulfate-polyacrylamide gel electrophoresis sample buffer. Samples were separated on 12% polyacrylamide gels. Phosphorylation was analyzed by autoradiography and quantified by phosphorimager analysis (Molecular Probes, Typhoon Trio).
Immunoblot analysis.
Total protein lysates were prepared from primary MEFs using a lysis buffer consisting of 150 mM NaCl, 50 mM Tris [pH 8.0], and 1% NP-40. Protein concentrations were standardized using the Bradford assay (Bio-Rad), and equal loading was confirmed by Ponceau S staining of polyvinylidene difluoride membranes after electroblotting as well as with a loading control (
-tubulin). The antibodies used for immunoblotting were to p27 (N20) and Cdc2 [P34(17)] from Santa Cruz, p21 (rabbit anti-mouse antibody) from BD Pharmingen, p53 Novocastra (CM5), phospho-Chk1 (133D3) and phospho-Cdc2 Thr161 from Cell Signaling, and
-tubulin (clone B-5-1-2) from Sigma. Blots were developed using a chemiluminescence detection kit for horseradish peroxidase (Pierce).
Statistical methods. Two-sample unpaired t tests for samples with unequal variance were used for comparison unless otherwise stated. The 95% confidence limits and P values are two sided.
| RESULTS |
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A·T transitions and G·C
T·A transversions, regardless of p27 genotype (data not shown), which is consistent with previous studies (9). Spontaneous –1 frameshifts were relatively minor in p27+/+ mice (3.5%) but accounted for 8.4% and 9.4% in the p27+/– and p27–/– mice, respectively (P = 0.036, Fisher's exact test), suggesting that repair in the absence of p27 may rely more heavily on the activity of DNA polymerases that are prone to introducing –1 frameshifts, such as Pol
, a member of the Y family of translesional DNA polymerases (34). Treatment with ENU altered the mutation spectrum of the colonic epithelium in all p27 genotypes. ENU induced an increase in the frequency of nearly all types of base substitutions except G·C
C·G transversions, with A·T
T·A substitutions accounting for 30.8% of the spectrum. The frequencies of G·C
A·T, G·C
T·A, and A·T
C·G substitutions in p27–/– mice was significantly higher than that found in wild-type mice (Table 2). p27+/– mice displayed an intermediate phenotype, indicating that p27 is haploinsufficient for the ability to guard against ENU-induced mutation. The frequency of ENU-induced –1 frameshifts remained low in the p27+/+ and p27+/– mice (0.6 x 10–5 ± 0.3 x 10–5 and 0.8 ± 0.4 x 10–5, respectively) but was increased to 8.2 x 10–5 ± 0.4 x 10–5 in p27–/– mice (Table 2), providing further evidence that a distinct repair process favoring –1 frameshifts may occur in p27–/– mice.
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Frequency of micronucleus formation. The micronucleus assay is a standard test used for the detection of chromosomal damage. It measures the ability of cells to repair DNA damage by detecting the formation of micronuclei (acentric fragments or complete chromosomes that failed to segregate properly and were excluded from the nucleus). Whereas the spleen culture assay involves a short period of in vitro culture prior to assessment of DNA damage, the micronucleus assay directly measures the in vivo response of peripheral blood cells without intermediate culture and thus provides a direct picture of the DNA damage response of cells within the context of the organism. We analyzed micronucleus formation in p27+/+, p27+/–, and p27–/– mice following low-dose gamma irradiation (high-dose irradiation arrests the majority of reticulocytes and thereby prevents the formation and subsequent recovery of micronuclei). While the spontaneous micronucleus frequencies (mean ± SEM) were similar in the p27+/+, p27+/–, and p27–/– genotypes (0.30% ± 0.02%, 0.26% ± 0.02%, and 0.29% ± 0.02%, respectively), by 48 h following 0.6 Gy gamma irradiation, it had increased to 1.9% ± 0.16%, 1.8% ± 0.07%, and 2.3% ± 0.13% (Fig. 1C). The micronucleus frequency from p27–/– mice was significantly higher than that from either p27+/– or p27+/+ mice.
p27 is expressed in the proliferative compartment of the intestinal crypt. p27 is a known inhibitor of GI tumorigenesis, and p27-deficient colon cells show an increase in MF following genotoxic insult. In order to evaluate the potential target cells of p27 deficiency in mutagenesis and intestinal tumorigenesis, we assessed the spatial distribution of p27 expression within the intestinal crypts from normal mice. p27-positive cells were found throughout the intestinal crypt; however, the majority were within the bottom 10 cell positions, peaking at cell position four (Fig. 2). Extensive kinetic analysis by Potten and colleagues has shown that the presumptive stem cell of the intestinal crypt resides at or near cell position 4 and that cell positions 5 to 15 contain the transit-amplifying cells, with proliferation peaking at cell position 10 (reviewed in reference 1) (Fig. 2B). Thus, p27 expression occurs within the proliferative compartment of the intestinal epithelium.
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The MIs within the intestinal crypts from unirradiated mice were similar between p27 genotypes (Fig. 3B). The p27 genotype did not alter the apoptotic index at any dose of radiation (data not shown). Radiation-induced G2/M arrest, however, was impaired in p27-deficient mice at low doses (0.6 and 1.2 Gy), although only 1.2 Gy reached statistical significance (Fig. 3). At higher doses (4 Gy), mitosis was equally inhibited in both p27+/+ and p27–/– intestinal epithelia, indicating that the effect of p27 is only seen at low doses of irradiation. Radiation-induced cell cycle arrest was most pronounced in cell positions 6 to 10 within the crypt, with an 80% reduction in mitotic figures in wild-type mice (P = 0.001) compared to only a 27% reduction in p27–/– mice (P = 0.39). The MI in position 6 to 10 from irradiated p27+/+ mice was reduced significantly compared to that in p27–/– mice (P = 0.02). p27+/– animals again displayed an intermediate phenotype, indicating that even partial loss of p27 impairs G2/M arrest. Thus, the impaired radiation-induced G2/M arrest conferred by p27 deficiency was most pronounced in cell positions 6 to 10, near the peak of p27 expression (Fig. 2).
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Both p27+/+ and p27–/– MEFs displayed a similar increase in the relative number of aberrant mitotic figures per total mitotic cells following gamma irradiation (data not shown). However, due to the higher MI of p27–/– MEFs, the absolute number of aberrant mitotic figures was higher in p27–/– MEFs (53 ± 10 per 106 cells) than in p27+/+ cells (21 ± 11 per 106 cells) (Fig. 4C). Together, these results indicate that a lack of G2/M arrest directly leads to an increased frequency of aberrant chromosomal segregation, and this is exacerbated in the absence of p27.
As another measure of chromosome damage at early time points following genotoxic damage, we analyzed the kinetics of DNA double-strand break formation in the absence of p27. Phosphorylation of the variant histone H2A.X (also known as gamma-H2A.X) is an early response to DNA double-strand break formation and can be visualized as foci by immunofluorescence (35, 36). Low-dose irradiation of late S/G2 phase-synchronized MEFs led to a statistically significant increase in phospho-H2A.X staining in p27–/– cells compared to p27+/+ cells (P = 0.009) by 30 min following exposure, but by 1 h and 2 h following irradiation, the frequencies of phospho-H2A.X positive cells were similar in both p27+/+ and p27–/– cells (Fig. 5).
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| DISCUSSION |
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Role of p27 in response to genotoxic damage. Bartek and Lukas (2) have suggested that the cell cycle checkpoint response to DNA damage may occur in two waves, with an initial, transient response occurring within 20 to 30 min and lasting only a few hours, while a second delayed, but more sustained response is mediated by the p53/p21 cascade. In normal, unperturbed intestinal epithelium, p27 is expressed in the proliferative compartment. In contrast, the expression of the related CDK inhibitor p21, while low in unirradiated murine intestinal crypts, is strongly upregulated in a p53-dependent manner by 4 h following gamma irradiation (46). p27 deficiency affected radiation-induced G2/M arrest at early (<4 h) but not later time points, suggesting a physiologic role for p27 protein in the immediate response to genotoxic insult, prior to p53-dependent upregulation of p21. The presence of p27 in the GI crypt progenitor cells may function as an immediate-early attenuator for halting cell cycle progression following genotoxic exposure during the time required for p53-dependent transcription and translation of p21 to bring about a sustained cell cycle arrest.
Although other reports have hinted that p27 functions at the G2/M transition, the physiologic relevance of this role remains unknown (7, 22). Chibazakura et al. found that p27 acts in concert with p21 and p107 to inhibit cyclin A-CDK activity following metaphase (7). Nakayama et al. showed that Skp2–/– cells undergo endoreduplication as a result of p27 accumulation in the absence of Skp2-directed proteolysis, indicating that degradation of p27 is required for entry into mitosis (22). Sugihara et al. (40) demonstrated that accumulation of p27 protein at 24 to 48 h following high-dose gamma irradiation is required for suppression of centrosome amplification and prevention of chromosomal instability; however, they did not evaluate either low-dose irradiation or time points earlier than 10 h postirradiation. We observed that p27 protein levels are not altered at early time points following irradiation. Cdc2 levels, however, are higher in G2/M phase p27–/– cells, even in the absence of irradiation, than in p27+/+ cells. Cdc2 is known to exhibit variation in both RNA and protein levels in addition to the well-characterized posttranslational regulation via inhibitory and activating phosphorylation (17). The mechanism by which p27 might affect Cdc2 protein levels, however, is unclear.
Cdc2 physically interacts with p27 and may be a target of inhibition by p27 (22). We demonstrated that inhibition of Cdc2-associated kinase activity at early time points (<4 h) following IR is impaired in the absence of p27. This agrees with the observation that p27 deficiency impairs radiation-induced G2/M arrest at early time points, and taken together, these results provide a plausible mechanism for the increase in the frequency of mutations and chromosomal aberrations following genotoxic insult in p27-deficient mice. The delay in G2/M arrest seen in p27–/– cells may be a result of higher levels of Cdc2, which would titrate inhibitory signals, thus necessitating stronger or more sustained DNA damage signaling in order to inhibit its activity and bring about cell cycle arrest. Higher genotoxin doses might elicit stronger cell cycle arrest signals, thus more efficiently inactivating CDKs even in the absence of p27. Thus, p27 functions in the immediate-early DNA damage response to low, more physiologic levels of DNA damage.
Clinical relevance. Radiotherapy for cancer has conventionally been administered as a fractionated dose, i.e., multiple administrations of a low dose of irradiation, in order to minimize the radiosensitivity of proliferating host tissues such as bone marrow and GI epithelium. The relatively recent advent of hyperfractionated radiotherapy attempts to avoid the dose-limiting effects of host radiosensitivity by further reducing the single dose of irradiation while increasing the number of doses administered (reviewed in reference 3). It is clear that intestinal epithelium responds differently depending on the radiation dose and on the molecular background of the target cells (Fig. 3B) (6). In the case of p27-deficient cells, they are more likely to continue progression through the cell cycle with concomitant fixation of mutations specifically at the low doses of irradiation that are more likely to be used in cancer therapy. In one of the few studies to examine the response of human tumors of known p27 status to radiotherapy, Oka et al. found that a high p27 labeling index prior to radiotherapy was associated with improved disease-free survival in cervical squamous cell carcinoma patients following a total dose of 27 Gy given in four or five fractionated doses (26), indicating a role for p27 in the response of tumors to fractionated radiotherapy. Further analysis of patient response to radio- or chemotherapy dose based on the p27 status of the tumor warrants investigation.
| ACKNOWLEDGMENTS |
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This work was supported by the American Cancer Society, the Life Possibilities Fund, and Public Health Service grant CA099517 from the National Cancer Institute. S.R.P. was supported by an NIH training grant in the Molecular Training Program in Cancer Research through the University of Washington.
| FOOTNOTES |
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Published ahead of print on 22 October 2007. ![]()
Present address: Epigenomics, Inc., Seattle, WA. ![]()
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