Molecular and Cellular Biology, November 2008, p. 6954-6966, Vol. 28, No. 22
0270-7306/08/$08.00+0 doi:10.1128/MCB.00925-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Vomastek,3,
Marcin P. Iwanicki,2,
W. Richard Burack,4
Divya Tiwari,1
Devanand Kumar,1
J. Thomas Parsons,2
Michael J. Weber,2* and
Vinay Kumar Nandicoori1*
National Institute of Immunology, Aruna Asaf Ali Marg, New Delhi 110 067, India,1 Department of Microbiology and Cancer Center, University of Virginia Health Sciences Center, P.O. Box 800734, Charlottesville, Virginia 22908-0734,2 Cell and Molecular Microbiology Division, Institute of Microbiology, Prague, Czech Republic,3 University of Rochester Medical Center, 601 Elmwood Ave., Rochester, New York 14642-86264
Received 10 June 2008/ Returned for modification 1 August 2008/ Accepted 9 September 2008
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In the inactive state the ERKs are anchored in the cytoplasm by their association with the MAPK/ERK kinases (MEKs) and several other proteins. Upon activation, the ERKs are released from their anchor and migrate to the nucleus, where they phosphorylate several transcription factors (such as Ets factors) and play an important role in transcriptional regulation (5, 7, 12, 18, 22, 45). Nuclear localization of ERKs can be brought about by either passive diffusion of monomers or active transport (1). Interaction with nucleoporins such as Nup153 and Nup214 has also been suggested to play a role in localization of ERK2 to the nucleus (26, 46), but virtually nothing is known about the ERK partners and substrates that might play a role in this process or in aspects of posttranscriptional gene regulation.
Once at their sites of action, ERKs recognize and phosphorylate serine or threonine residues in the sequence context of S/TP or PXS/TP (17). However, the specificity of the interaction and phosphorylation comes also from docking motifs on the substrates. Two different kinds of domains or motifs have been identified on candidate ERK substrates. The first is a KIM (kinase-interacting motif, also known as a D domain) which consists of a stretch of basic amino acids surrounded by aliphatic hydrophobic residues (leucines, isoleucines, or valines) (3, 38, 42, 50). The second is a DEF domain (docking site for ERK, FXF) consisting of two phenylalanine residues separated by one residue, followed by a proline (FXFP), although the proline residue is not essential (11, 15, 21, 43).
To understand the functions of the pathway, identifying and characterizing the direct in vivo targets of ERK phosphorylation and analyzing the molecular basis for substrate specificity are of primary importance. In a previous report (10), we identified candidate ERK substrates in cell lysates using a method developed by Shokat and colleagues, in which a structural "pocket" is engineered into protein kinases so that they can utilize ATP orthologs that have bulky substituents (37). In addition to the known ERK2 substrate Rsk2, two novel substrates, E3 ubiquitin ligase EDD (E3 identified by differential display) and nuclear pore complex protein Tpr (translocated promoter region), were found to associate with and be phosphorylated by the ERK2 pocket mutant.
Tpr was originally identified by its fusion (short fragments of Tpr) to various proto-oncogenes such as met and raf (19, 23, 29). Tpr localizes to the nuclear basket of the nuclear pore complex and is also found in the nucleus in the form of discrete foci (14). The functions of Tpr are poorly understood, but several lines of evidence indicate that it is involved in the process of nuclear export. Tpr has been shown to have a role in the nuclear export of proteins containing a leucine-rich nuclear export signal (14) and in the nuclear export of Huntingtin, a protein with no obvious nuclear export signal (8). Ectopic expression of mammalian Tpr has also been reported to result in accumulation of poly(A)+ RNA in the nucleus (2).
In this report, we characterize Tpr-ERK2 interactions and phosphorylation of Tpr by ERK2 in vitro and in vivo. We identify structural elements in Tpr and ERK2 important for Tpr and ERK association. ERK2 interacts with Tpr through positive cooperative interactions of DEF and the ERK phosphorylation sites. This is in contrast to the other ERK substrates identified with the "pocket mutant" technique, which display decreased binding following phosphorylation. Because phosphorylation of Tpr by activated ERK stabilizes their interaction, we hypothesize that this phosphorylation is not part of a signal amplification cascade but rather positions activated ERK to perform a continuing function in the nuclear pore. We also show that depletion of Tpr results in decreased nuclear accumulation of activated ERK2, suggesting a role for Tpr in modulating ERK2 translocation into the nucleus.
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4 mutant was a gift from M. H. Cobb, University of Texas Southwestern Medical Center, Dallas, TX (32). ERK2-
4 was subcloned into FLAG-ERK2 to generate FLAG-ERK2-
4.
The JNK1 construct was provided by Roger Davis, University of Massachusetts Medical School, Boston, MA (9), and the GST-p38
construct was provided by Dennis J. Templeton, University of Virginia, VA (36). pcDNA3-FLAG-JNK1 and pcDNA3-FLAG-p38
constructs were generated by amplifying JNK1 and p38
coding regions by PCR and subcloning the products into pcDNA3-FLAG vector. FLAG-tagged Tpr C-terminal (FLAG-TprC; amino acids 1626 to 2349) and FLAG-tagged Tpr N-terminal (FLAG-TprN; amino acids 1 to 800) constructs were generated by PCR amplification of the respective regions using EGFP-TprFL (14) as a template. PCR products were digested with NotI and ApaI (introduced through primers) and subcloned into the same sites in pcDNA3-FLAG vector. FLAG-tagged full-length Tpr (TprFL) was generated by ligating the NotI-BmtI fragment from FLAG-TprN and the BmtI-PpuMI fragment from pGFP-Tpr and subcloning into NotI-PpuMI sites of FLAG-TprC vector. FLAG-ERK2-DD
NN, FLAG-ERK2 L232A, and various FLAG-TprC mutants were generated by PCR mutagenesis.
Immunoprecipitation. Dishes (100 mm) of COS-1 cells (2.4 x 106 to 3 x 106 cells) were transfected using Lipofectamine 2000 (Invitrogen) according to the manufacturer's recommendations. Cells were allowed to recover overnight, and transfected cells were then serum starved for 4 to 5 h and stimulated either with epidermal growth factor (EGF) (20 ng/ml) for 10 min or with anisomycin (1 µM) for 30 min. Immunoprecipitation was carried out as described previously (10).
In vitro kinase reactions and phosphoamino acid and phosphopeptide analysis.
After transfection and immunoprecipitation as described above, the immunoprecipitated FLAG-TprFL, FLAG-TprC, and mutants of FLAG-TprC or the vector control were mixed with immunoprecipitated ERK2, and kinase reactions were performed in 25 mM HEPES (pH 7.4), 20 mM magnesium acetate, and 1 mM dithiothreitol containing 10 µCi [
-32P]ATP (Perkin Elmer, Boston, MA), for 10 min at 30°C. Phosphoamino acid and tryptic peptide analysis were performed as described previously (4, 10).
Metabolic labeling and phosphopeptide analysis. Dishes (100 mm) of COS-1 cells were transfected with 10 µg of FLAG-Tpr constructs and were allowed to recover overnight. Cells were washed twice with phosphate-free RPMI medium and starved for 1 h in phosphate-free RPMI medium (Invitrogen). Cultures were metabolically labeled in phosphate-free RPMI medium containing 3 mCi/ml carrier-free 32Pi (Perkin Elmer) for 3 h. For EGF-stimulated samples, EGF (20 ng/ml for 10 min) was added to the above medium. Cultures treated with the MEK inhibitor UO126 (Calbiochem, La Jolla, CA) were incubated with 20 µM inhibitor during the 3-h labeling and the EGF stimulation. Immunoprecipitation and tryptic peptide analysis were performed as described previously (10).
Immunoprecipitations, kinase assays, and two-dimensional gel electrophoresis.
32P-labeling of cyclopentyl ADP (cpADP) was carried out as described previously (10). Two 150-mm dishes of COS-1 cells (5 x 106 cells) were cotransfected with 6 µg of HA-ERK2 or HA-ERK2-QG and 12 µg of pcDNA3 or FLAG-TprFL or FLAG-TprFL-FXF
AXA,M4 and were allowed to recover overnight. Transfected cells were then serum starved for 4 to 5 h and stimulated with EGF (20 ng/ml) for 10 min. Immunoprecipitation, kinase assay, and two-dimensional gel electrophoresis were essentially performed as described previously (10).
Ectopic expression, siRNA attenuation of Tpr, and dynamic analysis of ERK in HEK293T cells. A double-stranded small interfering RNA (siRNA) targeting 5' GCACAACAGGATAAGGTTA 3' of the Tpr gene was purchased from Qiagen Inc. (Valencia, CA). The control siRNA duplex pool (nonspecific control duplex XIII) was purchased from Dharmacon (Lafayette, CO). HEK293T cells were plated in media containing 10% serum on 10 µg/ml fibronectin on 5 µg/ml collagen type IV-coated tissue culture dishes. The following day, cells were transfected using Polyfect reagent (for plasmid constructs) (Qiagen) or calcium phosphate (for siRNA) with 400 ng cyan fluorescent protein (CFP)-MEK1, 400 ng yellow fluorescent protein (YFP)-ERK, and 1 µg of pcDNA3 or 1 µg FLAG-TprFL or with control siRNA or Tpr siRNA. Twenty-four hours posttransfection, cells were serum starved for 3 h and stimulated with EGF (10 ng/ml). The cellular dynamics of YFP-ERK2 and CFP-MEK were captured using a Nikon Eclipse TE2000-E inverted microscope. To quantify YFP-ERK recruitment into the nucleus, the fluorescent intensity of nuclear YFP-ERK was divided by the total intensity (cytoplasmic plus nuclear intensity) of YFP-ERK plus CFP-MEK (YFP/CFP + YFP). Image analysis was performed using Image J software (Wayne Rasband, National Institutes of Health).
Immunofluorescence. Dishes (60 mm) of COS-1 cells (6 x 105 cells) were transfected with 1.5 µg of GFP-Tpr constructs using Lipofectamine 2000. Cells were trypsinized and plated on coverslips in a six-well dish 24 h after transfection and allowed to recover for 48 h. Cells were washed twice with phosphate-buffered saline and fixed with 3% paraformaldehyde for 20 min followed by extraction with cold methanol for 5 min at –20°C. Coverslips were mounted on slides using Vectashield mounting medium (Vector, Burlingame, CA), and cells were examined under a confocal microscope (Zeiss LSM 510 microscope; University of Virginia Advanced Microscopy Facility).
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FIG. 1. Carboxy terminus of Tpr is sufficient for association with ERK2 upon EGF stimulation. (A) Cells transfected with pcDNA3, FLAG-ERK2, and FLAG-ERK2-QG were serum starved for 4 to 5 h followed by stimulation with EGF (20 ng/ml) for 10 min. Cells were lysed and proteins immunoprecipitated (IP) with FLAG-M2 agarose beads. Immunoprecipitated proteins were resolved by 10% SDS-PAGE, followed by immunoblotting with anti-FLAG-M2 or anti-Tpr antibodies. (B) Cells transfected with pcDNA3, HA-TprC, FLAG-ERK2, or FLAG-ERK2 and HA-TprC together were serum starved and stimulated with EGF. Proteins were immunoprecipitated and analyzed by immunoblotting as described for panel A and probed with anti-FLAG-M2 and anti-HA antibodies. (C) As in panel B, except that the proteins were immunoprecipitated with anti-HA antibodies coupled to protein A agarose, followed by immunoblotting with anti-FLAG-M2 and anti-HA antibodies.
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To test the specificity of the interaction of Tpr with ERK2, we examined possible associations of Tpr with other MAPK pathway proteins as well. Endogenous Tpr associated strongly with ERK2, ERK2-QG, and ERK1, following stimulation with EGF (Fig. 2A). We also detected the association of Tpr with ERK2 and ERK1 in unstimulated reactions, albeit at much lower levels (Fig. 2A). A possible reason for this is the presence of low levels of activated ERKs in these cells even during serum starvation. No interaction between Tpr and MEK1 (Fig. 2A) was detected. These results suggest that the interaction of Tpr with ERK2 and ERK1 is specific and most likely requires activated ERKs. To examine Tpr interactions with JNK1 and p38
, we coexpressed HA-TprC and FLAG-tagged ERK2, JNK1, or p38
. It was evident from the lysate analysis (Fig. 2B) that expression levels of FLAG-JNK1 and HA-TprC in JNK-TprC-cotransfected cells were
2- to 3-fold lower than the expression levels of ERK2 and p38
and the corresponding HA-TprC levels. To compensate for the lower expression of JNK and TprC, twofold more lysate was used in immunoprecipitations. Results obtained with phospho-antibodies demonstrated efficient activation of MAPKs following stimulation (Fig. 2B). No associations between HA-TprC and MAPKs JNK1 and p38
were observed, irrespective of the activation statuses of these two kinases (Fig. 2B). These data demonstrate that Tpr interacts specifically with the ERKs and not with MEK1, JNK1, and p38
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FIG. 2. Tpr does not interact with MEK1, JNK1, or p38 . (A) Cells transfected with pcDNA3, FLAG-ERK2, FLAG-ERK2-QG, FLAG-ERK1, and FLAG-MEK1 were serum starved and stimulated with EGF. Cells were lysed and proteins immunoprecipitated (IP) with FLAG-M2 agarose beads followed by immunoblotting with anti-Tpr and anti-FLAG-M2 antibodies. (B) Cells were transfected with pcDNA3 or HA-TprC, or double transfected with HA-TprC and FLAG-ERK2 or FLAG-JNK1 or FLAG-p38 . The last two were stimulated with anisomycin for 30 min instead of EGF. Cell lysates were probed with anti-FLAG-M2 and anti-HA antibodies. Based on these results, twice the amount of lysate was used for immunoprecipitation from cells cotransfected with FLAG-JNK1 and HA-TprC, compared to amounts for other transfected cells. Proteins were immunoprecipitated with FLAG-M2 agarose beads. One-twentieth of the immunoprecipitated proteins was analyzed by probing with anti-FLAG-M2, anti-phosphor-ERK2 (Sigma), anti-phosphor-JNK1 (Sigma), and anti-phospho-p38 (Sigma). The remaining immunoprecipitated proteins were probed with anti-HA antibodies.
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FIG. 3. ERK2 phosphorylates serine and threonine residues of Tpr in vitro. (A) Cells were transfected individually with FLAG-ERK2, FLAG-TprC, and pcDNA3 vectors. Cells were serum starved, and FLAG-ERK2-transfected cells were stimulated with EGF. Proteins were immunoprecipitated from lysed cells with FLAG-M2 agarose beads, and FLAG-ERK2 immunoprecipitate was mixed either with FLAG-TprC immunoprecipitate or with immunoprecipitate from pcDNA3-transfected cells. Kinase reactions were carried out with [ -32P]ATP at 30°C for 10 min. (B) Phosphoamino acid analysis of in vitro-labeled TprC from time course reactions. p, phosphorylated. (C) In vitro phosphorylated TprC was digested with trypsin, and the resulting phosphopeptides were mapped by two-dimensional TLC (4). Two major spots are indicated by white arrows, and four minor spots are indicated by black arrows.
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FIG. 4. Tpr is phosphorylated by ERK2 at four different sites. (A) COS-1 cells were transfected with FLAG-TprFL, FLAG-TprC, and FLAG-TprC mutants (as specified above the maps). The immunoprecipitated FLAG-tagged Tpr proteins were mixed with immunoprecipitated FLAG-ERK2, and kinase reactions were carried out with [ -32P]ATP. In vitro-phosphorylated FLAG-tagged TprFL, TprC, and TprC mutants were digested with trypsin, and the resulting phosphopeptides were mapped by two-dimensional separation on TLC. Spots in similar positions in TprFL and TprC maps are indicated by numbered black arrows. Spots missing due to mutations in the TprC phosphorylation sites are indicated by numbered white arrows. (B) The upper panel depicts the nomenclature of the combination target site mutants of TprC. The putative D domain (2091RRQSVGRGLQL2101) and DEF motif (2150FRF2152) are also indicated (residues that match the consensus for each motif are indicated by bold). In vitro-phosphorylated proteins were digested with trypsin, and the resulting phosphopeptides were mapped by TLC (4). Major (spots 3, 4, and 4*) and minor (spots 1 and 2) spots in TprC are indicated by numbered black arrows. Missing spots in TprCM2, TprC16M3, and TprC12M3 are indicated by numbered white arrows. In TprC-M4, the location of the missing spots is circled by a dotted line. (C) Incorporation of 32P in in vitro-phosphorylated TprC, TprC-M4, and the vector control samples was quantified by Cerenkov counting in three independent experiments. Counts in TprC were normalized to 100% in each experiment, and the percent counts in other samples were calculated with respect to TprC. The results were plotted with percent counts with respect to TprC on the y axis and the samples on the x axis.
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90% (Fig. 4C). Based on these results, we conclude that Thr2123 and Ser2141 are the major ERK2-mediated phosphorylation sites and Thr2102 and Thr2200 are minor ERK2-mediated phosphorylation sites on Tpr in vitro.
ERK2 phosphorylates Tpr at the same sites in vivo and in vitro.
To determine if the same Tpr sites are utilized by ERK2 in vivo and in vitro, cells transfected with FLAG-TprFL and FLAG-TprC were metabolically labeled with 32Pi with or without EGF stimulation. We observed a reproducible
1.3-fold increase in levels of phosphorylation upon EGF stimulation (data not shown). Blocking the ERK activation with MEK inhibitor UO126 resulted in an
50% decrease in phosphorylation levels of TprFL and TprC compared to levels in EGF-stimulated samples (data not shown). Tryptic peptide maps obtained for TprC with and without EGF stimulation were similar except for a slight increase in the intensity of spots (Fig. 5A). This is in keeping with earlier results where some interaction of Tpr with ERK2 was detected even in non-EGF-stimulated cells (Fig. 1 and 2), which is possibly due to the fact that serum starvation does not completely eliminate activated ERK from these cells. Pretreatment of cells with the MEK inhibitor UO126 abolished the emergence of the tryptic peptides numbered 1, 2, 3, 4, and 4*, demonstrating that phosphorylation on these peptides depends on activation of ERK. In addition, we also detected tryptic peptides that are not affected by EGF treatment or UO126 pretreatment (Fig. 5A). These most likely arise from phosphorylation by other cellular kinases. In vivo-labeled full-length Tpr (TprFL) and C-terminal Tpr fragment (TprC) peptide maps were almost identical, suggesting that all the ERK-dependent and -independent phosphorylations are in the C-terminal 800 amino acids of Tpr. Comparison of the tryptic peptide maps of in vivo- and in vitro-labeled Tpr (Fig. 5A) showed that peptides which disappear upon UO126 pretreatment migrate at the same position on the thin-layer chromatography (TLC) plates as the in vitro phosphorylated peptides, indicating that these peptides were likely phosphorylated by ERK2.
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FIG. 5. ERK2 phosphorylates Tpr at the same sites in vivo and in vitro. (A) COS-1 cells were transfected with FLAG-TprFL or FLAG-TprC vectors. Transfected cells were labeled metabolically for 3 h. For the EGF-stimulated samples, EGF (20 ng/ml) was added after 3 h to the labeling cells for 10 min. For samples with MEK inhibitor UO126, 20 µM of inhibitor was present during the 3-h labeling and EGF stimulation. FLAG-tagged TprFL and TprC were immunoprecipitated, resolved, transferred, and autoradiographed. In vivo-labeled TprFL and TprC were digested with trypsin, and the resulting phosphopeptides were mapped by two-dimensional TLC. In vitro-labeled TprC from the earlier experiment was resolved on TLC plates along with in vivo-labeled TprC and TprFL. Peptide spots that show slight increases in intensity following EGF stimulation are indicated by white arrows (panel 2). Spots that did not disappear with UO126 pretreatment are marked in the first panel by a dotted line. (B) FLAG-TprC- and FLAG-TprC-M4-transfected cells were metabolically labeled as described above with EGF stimulation. Tryptic digested peptides were resolved by two-dimensional TLC (4).
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Tpr-ERK2 interaction requires ERK2 phosphorylation and dimerization but not the D domain.
Because Tpr bound only to activated ERKs, we examined the molecular mechanism by which ERK activation enabled Tpr binding. In the inactive state, ERKs are anchored to MEKs in the cytoplasm. Following cell stimulation and activation, ERKs are reported to dimerize and migrate into the nucleus (22). To decipher the structural and functional requirements of ERK in mediating the Tpr-ERK interaction, we utilized well-characterized ERK2 mutants. Endogenous Tpr coimmunoprecipitated efficiently with wild-type ERK2 following activation but not with the phosphorylation site mutant ERK2-TAYF (Fig. 6A). Since phosphorylation of ERK2 is a prerequisite for dimerization, we asked whether ERK2 dimerization is essential for Tpr binding. While Tpr coimmunoprecipitated with activated wild-type ERK2, no interaction was detectable with the ERK2 dimerization mutant FLAG-ERK2-
4 (Fig. 6B). These results demonstrate that Tpr-ERK2 interaction requires both phosphorylation of ERK2 (on TEY residues) and its dimerization.
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FIG. 6. Tpr-ERK2 interaction requires ERK2 phosphorylation and dimerization, but not the D domain. (A) Cells transfected with pcDNA3, FLAG-ERK2, and the FLAG-ERK2-TAYF mutant were serum starved and stimulated with EGF. Proteins immunoprecipitated (IP) with FLAG-M2 agarose beads from lysed cells were immunoblotted and probed with anti-FLAG and anti-Tpr antibodies. (B) Cells transfected with pcDNA3, FLAG-ERK2, and the FLAG-ERK2- 4 dimerization mutant were serum starved and stimulated with EGF. Proteins immunoprecipitated with FLAG-M2 agarose beads were immunoblotted and probed with anti-FLAG and anti-Tpr antibodies. (C) COS-1 cells transfected with pcDNA3, FLAG-ERK2, and FLAG-ERK2-DD NN were serum starved, followed by stimulation with EGF as usual. Proteins immunoprecipitated from lysed cells with -FLAG-M2 agarose beads were immunoblotted, and lysates and immunoprecipitates were probed with anti-FLAG and anti-MEK1 mouse monoclonal (Transduction Laboratories), anti-Rsk1 goat polyclonal (Santa Cruz Biotechnology Inc.), and anti-Tpr antibodies.
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ERK2 interacts with Tpr through DEF and phosphorylation sites.
Next, we investigated whether ERK associates with Tpr through a DEF motif. It has been shown that the phosphorylation of T183 and Y185 residues on ERK2 causes a conformational change that results in the interaction of pY185, M197, L198, Y231, and L232 residues on the ERK2 surface, with two phenylalanine residues in the DEF motif-containing peptides (24). We found that ERK2 mutated at L232 did not associate with TprC (Fig. 7A), and conversely, TprC with a mutated DEF domain (FXF
AXA) showed decreased association with ERK2 (Fig. 7C;
50%). These data strongly suggest that the interaction of ERK2 with Tpr occurs via the DEF domain on Tpr. However, to our surprise, we also detected decreased interaction of TprC-M4 with ERK2 compared to that of the wild type (Fig. 7B and C;
60%). These results were intriguing, as they suggested that ERK phosphorylation sites in Tpr might be involved in the ERK-Tpr binding interaction. To further investigate this observation, we generated two more Tpr mutants: FLAG-TprC-FXF
AXA,M4, a combination mutant of phosphorylation sites and DEF mutations, and FLAG-TprC-
60, a deletion of 60 amino acids encompassing DEF and two major and one minor phosphorylation sites. Significantly, when we utilized a combination mutant of docking domain and phosphorylation sites (TprC-FXF
AXA,M4) or a TprC-
60 mutant, we could barely detect any interaction between Tpr and ERK2 (Fig. 7B and C;
5%). These results show that the interaction between ERK2 and Tpr is through the mutually reinforcing combination of the DEF motif and the Tpr phosphorylation sites.
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FIG. 7. ERK2 interacts with Tpr through DEF and phosphorylation sites. (A) Cells were cotransfected with FLAG-ERK2 or FLAG-ERK2-DD NN or FLAG-ERK2 L232A or pcDNA3 and HA-TprC. Following serum starvation and EGF stimulation, proteins were immunoprecipitated (IP) with anti-FLAG antibodies. Lysates and immunoprecipitated proteins were probed with anti-FLAG and anti-HA antibodies. Immunoprecipitates were also probed with -phospho-ERK antibodies. (B) Cells were transfected with FLAG-TprC or HA-ERK2 or double transfected with FLAG-TprC or FLAG-TprC-FXF AXA, FLAG-TprC-M4, or FLAG-TprC-FXF AXA,M4 or FLAG-TprC- 60 and HA-ERK2. Following serum starvation and EGF stimulation, proteins were immunoprecipitated with anti-HA antibodies. Lysates and immunoprecipitated proteins were probed with anti-FLAG, anti-HA, and anti-phospho-ERK antibodies. (C) Appropriate enhanced chemiluminescence exposures that are within the linear range of the X-ray film were used for quantitating coimmunoprecipitated wild-type and Tpr mutants using Image J software (Wayne Rasband, National Institutes of Health). Presence (+) or absence (–) of EGF and the sample names are indicated. Values obtained for the TprC+EGF sample were set at 100%. Percent binding values for the remaining samples were calculated with respect to TprC+EGF in each experiment. Percent binding values from three independent experiments were used for calculating standard deviations.
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AXA (Fig. 8). Though ERK2-K52R has very low kinase activity, it is efficiently phosphorylated on TEY residues (20), which is necessary for ERK2-Tpr interaction. If the interaction is through the DEF and the hydroxyl groups of target serine/threonine residues, there should not be any difference in the binding efficiencies of TprC with activated ERK2 and ERK2-K52R. Furthermore, this model also predicts that ERK2 and ERK2-K52R will associate equally well with TprC-FXF
AXA, where the DEF motif is mutated. However, if the phosphorylation of target serine/threonine residues is required for the interaction, one would expect decreased interactions of TprC with ERK2-K52R compared with those for ERK2. Since ERK2-K52R does not possess kinase activity, its interaction with TprC should be similar to that of the ERK2 interaction with TprC-M4. Results obtained in Fig. 8 agree well with this prediction. Likewise, ERK2-K52R interaction with TprC-FXF
AXA should be similar to that of ERK2 with TprC-FXF
AXA,M4. It is evident from the data (Fig. 8) that the TprC-FXF
AXA interaction with ERK2-K52R is almost negligible. These results suggest that the interaction of ERK2 with Tpr is through DEF and that the phosphorylated serine/threonine residues and the phosphorylation of Tpr by ERK2 increase their interaction.
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FIG. 8. Tpr phosphorylation enhances ERK2-Tpr binding. (A) Cells were cotransfected with pcDNA3 or HA-ERK2 or HA-ERK2-K52R and FLAG-TprC or FLAG-TprC-FXF AXA. Following serum starvation and EGF stimulation, proteins were immunoprecipitated (IP) with anti-HA beads (Sigma). Lysates and immunoprecipitated proteins were probed with anti-FLAG and anti-HA antibodies.
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AXA,M4 mutant. As anticipated, ERK2 or ERK2-QG coimmunoprecipitated with the wild-type TprFL but not with the mutant TprFL-FXF
AXA,M4 (Fig. 9A), which is in agreement with our results in Fig. 7B. To detect substrates of Tpr-associated ERK2, we performed in vitro kinase reactions with these immunoprecipitates, using the ATP analog [
-32P]cpATP. Since [
-32P]cpATP is selectively utilized by ERK2-QG, the direct ERK2 substrates will become radiolabeled in immunoprecipitates that contain ERK2-QG and wild-type Tpr but not in those that contain wild-type ERK2 (which cannot utilize the analog) nor in immunoprecipitates of Tpr FXF
AXA,M4. As Tpr is a substrate for ERK2, we detected significant phosphorylation of Tpr by ERK2-QG (Fig. 9B). In addition, we detected another radiolabeled band at
70 kDa (Fig. 9B), indicating phosphorylation of an additional Tpr-interacting protein by the Tpr-bound active ERK2. Moreover, when the resolution of the gel system was increased by using two-dimensional gels, we detected more spots indicative of direct phosphorylations by Tpr-tethered ERK2 (Fig. 9C, middle panel). These data suggest that ER2K phosphorylated the proteins that interact with Tpr and that the ERK2-Tpr association is necessary for this process.
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FIG. 9. ERK2 phosphorylates proteins that interact with Tpr. (A) COS-1 cells were cotransfected with FLAG-TprFL or FLAG-TprFL-FXF AXA,M4 and HA-ERK2 or HA-ERK2-QG. Cells were serum starved and stimulated with 20 ng/ml EGF, and the proteins were immunoprecipitated (IP) with FLAG-M2 agarose beads. In vitro kinase reactions were carried out with 1/10 of the immunoprecipitated proteins, and part of the lysate was resolved by SDS-PAGE, transferred onto a nitrocellulose membrane, and probed with anti-FLAG and anti-HA antibodies. (B) Kinase reactions were carried out with the remaining 9/10 of immunoprecipitated proteins by using 20 µCi [ -32P]cpATP (analog ATP) as the substrate for 15 min at 30°C. One-fifth of the volume of these reaction mixtures was resolved by SDS-PAGE, transferred onto a nitrocellulose membrane, and autoradiographed. (C) The remaining part of the kinase reaction mixtures was resolved on pH 4 to 7 two-dimensional gels as described in our previous report (10). Background spots indicated by white arrows were used for aligning the autoradiograms. Additional spots that are specifically detected in TprFL+ERK2-QG reactions (middle panel) are indicated by black arrows.
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FIG. 10. Tpr regulates YFP-ERK recruitment into the nucleus in response to EGF stimulation. Control- or Tpr siRNA-treated HEK293T cells expressing CFP-MEK and YFP-ERK were plated on glass dishes coated with extracellular matrix components (10 µg/ml fibronectin and 5 µg/ml collagen type IV). The next day, cells were serum deprived for 3 h and stimulated with EGF (10 ng/ml). (A) Western blot analysis of Tpr expression in control and Tpr siRNA-treated cells. Lysates from control and Tpr knockdown cells were probed with antiTpr and antipaxillin antibody as described in Materials and Methods. (B) Images of and quantification of YFP-ERK nuclear localization in control and Tpr siRNA-treated HEK293T cells prior to and after EGF stimulation. (C) Images show the quantification of YFP-ERK in pcDNA3- or Flag-Tpr-expressing cells prior to and after EGF stimulation and Western blot analysis of Flag-Tpr expression in pcDNA3- and Flag-Tpr-expressing cells. In panels B and C, approximately 50 to 70 cells per each experimental condition were used to quantify YFP-ERK translocation to the nucleus. Each experiment was repeated twice.
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Tpr-ERK2 interaction motifs.
The D and DEF domains are structural elements important for efficient interaction of diverse sets of proteins with MAPKs (41, 44). The D domain associates promiscuously with MAPK family members, including ERK, JNK, and p38 (42, 43). On the other hand, the FXF motif of the DEF domain specifically associates with ERK and does not mediate the interaction with JNK and p38, probably due to steric constraints in JNK and p38 (21, 24, 47). Our observation that Tpr interacts with ERK primarily through the FXF motif of the DEF domain suggested that Tpr would specifically associate with ERKs. Indeed, Tpr associated specifically with ERK2 and ERK1 but not with the close family member JNK1 or p38
or the ERK upstream activator MEK1 (Fig. 2). Structural and biochemical studies showed that ERK preferentially phosphorylates residues that are located close to the N terminus of the DEF domain (11, 21, 24). Consistent with this, we found that the major Tpr phosphorylation sites are located N terminally of the DEF domain. Moreover, because kinase-defective ERK2-K52R is less effective at binding than the wild-type ERK2, it is likely that the phosphorylation of Tpr occurs in cis by the kinase molecule that is bound to the Tpr. Together, these data indicate that the DEF domain of Tpr has a dual function, as it specifically selects ERK and directs ERK activity toward specific phosphorylation sites on Tpr.
Tpr functions. Nucleoporin Tpr was reported to play a role in the export of leucine-rich nuclear export signal-containing proteins (14). In order to investigate the role of ERK-mediated phosphorylation of Tpr on the import/export of proteins, we utilized a hormone-inducible, GFP-labeled chimeric Rev protein (Rev/GR/GFP) construct developed by Love et al. (25). We did not detect any significant difference in the import or export of the Rev/GR/GFP protein between wild-type and Tpr-depleted COS-1 cells (data not shown). In agreement with these findings, Shibata et al. (39) reported that depleting nuclei of Tpr by microinjection with Tpr antibody did not alter either protein import or export. Contrasting results obtained by Frosst et al. (14) and our group could be due to differences in the types of cell lines and the fact that they used antibody injection whereas we used siRNA as a mechanism for depleting Tpr (data not shown).
The yeast homolog Mlp1 was shown to be involved in the nuclear retention of unspliced mRNAs (16). These data imply a possible role for Tpr in the export of unspliced mRNA. Knockdown of Tpr with siRNA resulted in increased export of unspliced RNA as measured by production of the HIV gag gene product p24 in the supernatant (J. Coyle, D. Rekosh, and M.-L. Hammarskjold, personal communication). We hypothesized that ERK binding and phosphorylation could alter this measurable Tpr function, but experiments carried out by us in collaboration with Coyle et al. did not provide evidence that ERK2-mediated phosphorylation of Tpr plays a role in the export of unspliced mRNAs (data not shown).
Role of Tpr-ERK2 interaction. ERK binding could play a role in the localization of Tpr to the nuclear pore, as has been observed in the case of the cyclin-dependent kinase inhibitor p27kip1 (13) and NFATc (nuclear factor of activated T cells) (31). However, expression of Tpr-M4, which associates poorly with ERK2 and cannot be phosphorylated by it, localized normally in the nuclear membrane as judged by immunofluorescence (Fig. 11). Previous studies implicated ERK2 interaction with nucleoporins Nup153 and -214 in the translocation of both unphosphorylated and phosphorylated ERK2 (26, 46). Mutants of ERK2 defective in interaction with the FXF motif of DEF domain-containing proteins show decreased rates of nuclear import. This was proposed to be due to the decreased interaction of mutant ERK2 protein with nucleoporin Nup153 (48). However, translocation of wild-type and mutant GFP-ERK2 in Nup153-depleted cells was not measured. Since the interaction of ERK2 with Tpr is through the DEF domain, we speculated that Tpr might play a role in modulating the translocation of ERK2 into the nucleus. In agreement with these predictions, depletion or overexpression of Tpr resulted in decreased localization of ERK2 upon EGF stimulation (Fig. 10). The fact that either depletion or overexpression of Tpr interfered with ERK translocation is consistent with our proposal that Tpr functions both as an ERK substrate and as an ERK scaffold: it is characteristic of scaffold proteins that appropriate stoichiometry of all the components is necessary for accurate function (35).
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FIG. 11. Localization of GFP-Tpr and GFP-Tpr-M4. Images show the confocal microscopy of COS-1 cells transfected with GFP-Tpr or GFP-Tpr-M4 (as described in Materials and Methods).
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D.T. is a Senior Research Fellow of the Council of Scientific and Industrial Research.
We thank members of the Parsons-Weber-Parsons group for helpful discussions; Scott Eblen for the FLAG-ERK2-TAYF and FLAG-ERK2-K52R constructs; Larry Gerace, Melanie Cobb, Dennis J. Templeton, and Roger Davis for materials used in this study; John Coyle, Marie-Louise Hammarskjold, and David Rekosh for assistance in testing the effects of Tpr phosphorylation on nuclear transport; and Swati Saha for critical reading of the manuscript.
Published ahead of print on 15 September 2008. ![]()
These authors contributed equally to this work. ![]()
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