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Molecular and Cellular Biology, December 2008, p. 7236-7244, Vol. 28, No. 23
0270-7306/08/$08.00+0 doi:10.1128/MCB.01334-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
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Division of Immunotherapy, Department of Surgery, Program of Molecular Mechanism of Diseases and Comprehensive Cancer Center,1 Division of Molecular Medicine and Genetics, Department of Internal Medicine,2 Department of Pathology, University of Michigan, Ann Arbor, Michigan 48109,3 Program in Genetics and Genome Biology, The Hospital for Sick Children, Toronto, Ontario, Canada4
Received 21 August 2008/ Accepted 19 September 2008
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. In the GSK-3β+/+ but not the GSK-3β–/– cells, Epm2a small interfering RNA significantly enhanced cell growth. Consistent with an increased level of cyclin D1, the phosphorylation of retinoblastoma protein (Rb) and the levels of Rb-E2F-regulated genes cyclin A, cyclin E, MCM3, and PCNA are also elevated. Inhibitors of GSK-3β selectively increased the cell growth of Epm2a+/+ but not of Epm2a–/– cells. Taken together, our data demonstrate that laforin is a selective phosphatase for GSK-3β and regulates cell cycle progression by GSK-3β-dependent mechanisms. These data provide a cellular basis for the tumor suppression activity of laforin. |
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GSK-3β is a multifunctional serine/threonine protein kinase (2, 6, 12) and a component of multiple signal transduction pathways, including the insulin, Wnt, and Ras signaling pathways. In the Wnt signaling pathway, GSK-3β phosphorylates β-catenin for its degradation and is an essential negative regulator of the Wnt/β-catenin pathway (1, 4). Wnt inhibits the enzymatic activity of GSK-3β, thereby stabilizing β-catenin and enabling its association with T-cell factor (TCF)/lymphoid enhancer-binding factor (LEF) protein complexes to activate the transcription of target genes, including those like c-myc and cyclin D1 (25). However, how GSK-3β activity is regulated has been poorly understood.
Epm2a encodes a 331-amino-acid dual-specificity phosphatase called laforin (5, 10, 20-22). Loss-of-function mutations in Epm2a result in Lafora disease, an autosomal recessive disorder in which glycogen metabolism is disturbed, resulting in the formation of insoluble forms of glycogen and their precipitation and accumulation in neurons, with subsequent neurodegeneration and epilepsy (22). Recently, we demonstrated that laforin causes the dephosphorylation of GSK-3β at Ser9 (17, 32) and maintains its steady-state activity (32). More importantly, we showed that the absence of laforin results in neoplastic transformation and, in an immunocompromised host, in tumor formation and metastasis. We showed that laforin's tumor suppressor effect is in part mediated through its action on GSK-3β in the Wnt signaling pathway (32). Interestingly, how laforin represses tumor development remains largely unexplained. Based on the laforin-GSK-3β connection, it is plausible that laforin may regulate GSK-3β-mediated degradation of cyclin D1 and/or modulate its transcription via the β-catenin-TCF complex. Here, we report that, by a strict GSK-3β-dependent mechanism, laforin negatively regulates cell cycle progression and modulates the levels of cyclin D1. These data provide a missing link between laforin and cell cycle regulation and explain at least in part the tumor suppressor function of laforin.
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Epm2A siRNA constructs. Oligonucleotides encoding two small interfering RNAs (siRNAs) directed against Epm2a have core sequences as follows: siRNA1, 5'-AAGGTGCAGTACTTCATCATG-3', and siRNA2, 5'-GGTTCACTCTTCCATATGC-3'. These oligonucleotides were inserted into a modified pLenti6/V5-D-TOPO vector (Invitrogen). Lentivirus stocks were produced in 293FT cells according to the manufacturer's protocol. Virally transduced cells were selected with blasticidin.
Colony formation assay.
GSK-3β+/+ or GSK-3β–/– cells were transfected with either the control vector or vectors that express Epm2a siRNAs as described previously (32). At 48 h after transduction, cells were counted and plated in 100-mm dishes in triplicate and cultured in medium containing 5 µg/ml blasticidin. After 3 weeks in culture, the colonies were stained with 0.125% crystal violet, and the total number of colonies (
20 cells) per plate was counted using a microscope.
Cell growth assay. Cells were seeded into 12-well plates at a density of 1.5 x 104 cells/well and were grown in complete medium containing 10% fetal bovine serum (FBS) as described above. The viable cells were stained by 0.4% trypan blue solution (Sigma), and the cells were counted in triplicate every day using a hemocytometer.
Serum starvation. The cells were seeded into six-well plates at 3 x 105 cells/well in Dulbecco modified Eagle medium (DMEM) without FBS for 24 h. After reseedings with medium containing 10% FBS, cells were collected every 8 h for up to 24 h for analyses by flow cytometry, real-time PCR, and Western blotting.
Cell cycle analysis. The cell monolayer was harvested after treatment with EDTA-trypsin, washed with ice-cold phosphate-buffered solution (PBS), and fixed in ice-cold 70% ethanol overnight at –30°C. After being washed twice with PBS, the cells were incubated in RNase A-PBS (100 µg/ml) at 37°C for 30 min. DNA was labeled with propidium iodide (50 µg/ml) (BD Biosciences) and analyzed with an LSII flow cytometer and CELLQuest software (Becton Dickinson). The percentages of cells in G0/G1, S, and G2/M phases were evaluated by analyzing 2 x 104 cells using the ModFit LT 3.0 program (Becton Dickinson).
Real-time reverse transcription-PCR. Total RNA was isolated from the GSK-3β+/+ and GSK-3β–/– cells using the QIAamp RNA minikit (Qiagen). All RNA samples were treated with DNase I to eliminate any residual DNA. We performed first-strand cDNA synthesis using the SuperScript first-strand synthesis system kit (Invitrogen) and analyzed the resulting cDNA for differential gene expression by using real-time PCR in the Applied Biosystems 7900HT fast real-time PCR system using a Sybr green PCR master mix kit (Applied Biosystems). All primer sequences are listed in Table S1 in the supplemental material. The relative amounts of gene expression were calculated by using the expression of Hprt as an internal standard.
Western blotting. Single-cell suspensions were lysed in ice-cold buffer (20 mM Tris-HCl [pH 7.5], 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100, 2.5 mM sodium pyrophosphate, 1 mM β-glycerophosphate, 1 mM sodium fluoride, and 1 mM sodium orthovanadate supplemented with complete protease and phosphatase inhibitors [Sigma]).
For nuclear proteins, the cells were first incubated in buffer A (10 mmol/liter HEPES [pH 7.8], 10 mmol/liter KCl, 2 mmol/liter MgCl2, 0.1 mmol/liter EDTA, 1% NP-40, and protease inhibitors), and the pellet was suspended in buffer B (50 mmol/liter HEPES [pH 7.8], 300 mmol/liter NaCl, 50 mmol/liter KCl, 0.1 mmol/liter EDTA, 10% [vol/vol] glycerol, and protease inhibitors). The lysates were collected by centrifugation at 4°C at 13,000 rpm for 10 min. Aliquots of the supernatants containing 50 µg of protein were resolved by electrophoresis and transferred to a Hybond-P (polyvinylidene difluoride) membrane (Amersham Biosciences). The primary antibodies were antilaforin (Genemed Synthesis, Inc., San Francisco, CA), anti-GSK-3β (Cell Signaling), anti-phospho-GSK-3β (Ser9) (catalog no. 9336; Cell Signaling), anti-Akt (9272; Cell Signaling), anti-phospho-Akt (Ser473) (9271; Cell Signaling), anti-cyclin D1 (sc-753; Santa Cruz Biotechnology), phospho-cyclin D1 (Thr286) (2921; Cell Signaling), anti-CDK4 (2906; Cell Signaling), anti-phospho-Rb (Ser795) (9301; Cell Signaling), anti-β-catenin (9587; Cell Signaling), and anti-β-actin (A5441; Sigma) antibodies. The secondary antibodies were anti-rabbit or -mouse immunoglobulin G-horseradish peroxidase (7074 or 7076; Cell Signaling). The signals were detected by enhanced chemiluminescence reagents (Amersham Biosciences).
MTT assay. Cell proliferation was detected by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) (Sigma) assay. Briefly, when cells were in exponential growth, they were seeded on a 96-well plate (2 x 104 cells/100 ml/well) for 24 h until confluence occurred. Cells were divided into a control (dimethyl sulfoxide) group, a lithium chloride (LiCl) (L9650; Sigma) group, and a 6-bromoindirubin-3'-oxime (BIO) (B1686; Sigma) group. The concentration of LiCl was 25 mM, and that of BIO was 1 µM. After 48 h, 10 µl MTT (5 mg/ml) was added and the mixture was incubated at 37°C for 4 h. Dimethyl sulfoxide (200 µl) was added to each well, and the plate was oscillated for 10 min until the crystals were dissolved completely. Absorbance (optical density) was measured at 570 nm with a scanning multiwell spectrophotometer (BioTek Instruments Inc., Burlington, VT).
Statistics. Differences in levels of gene expression and numbers of colonies were evaluated by using the unpaired Student t test, and values are represented by means ± standard deviations (SD). The comparisons between cell growth curves of silencing and control groups were made by using Fisher's protected least-significant-difference test. StatView 5.0 software (SAS Institute Inc.) was used for all statistical calculations.
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FIG. 1. Targeted mutation of Epm2a increases the proportion of thymocytes in the cycle. (a and b) The percentages of cells in G0/G1, S, and G2/M phases were evaluated by flow cytometry. A representative profile from each group (a) and the summary data (b) are shown. The experiments whose data are shown in this figure were repeated three times, involving a total of seven mice in each group. (c) Epm2a downregulates the mRNA levels of cyclin E and PCNA. Data shown are relative transcript levels after normalization against the housekeeping gene Hprt. The transcript levels in one of the WT mice were artificially defined as 1.0. Data shown are means ± SD from three independent experiments. *, P < 0.05; **, P < 0.01.
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FIG. 2. Epm2a inhibited cell growth. (a) Growth rate. Equal numbers (1.0 x 104 cells/well) of MEF from Epm2+/+, Epm2+/–, and Epm2a–/– mouse embryos were seeded on 12-well plates and cultured with DMEM with 10% FBS for 0 to 5 days. The cells were treated with trypsin, and the number of viable cells was counted with a hemocytometer. Data are shown as means and SD from experiments with three independent embryos. (b) The MEF prepared from Epm2+/+, Epm2+/–, and Epm2a–/– embryos were incubated for 24 h with FBS-free medium to synchronize cells in G0/G1 phase (0 h). After the cells were shifted to the medium with 10% FBS for 24 h, they were collected for analysis (24 h). The percentages of cells in G0/G1, S, and G2/M phases were evaluated by flow cytometry. The experiments whose data are shown in this figure were repeated three times, involving a total of three embryos in each group.
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. Thus, laforin is a selective phosphatase for GSK-3β. The selectivity of laforin allows differential regulation of the two similar enzymes.
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FIG. 3. Targeted mutation of Epm2a increased the phosphorylation of cyclin D1 and GSK-3β but not GSK3 . Primary MEF from three WT and three Epm2a embryos were serum starved for 24 h and restimulated with 10% fetal calf serum for 24 h. The lysates were analyzed by Western blotting for their levels of laforin, GSK-3β, phospho-GSK-3β [p-GSK-3β (Ser9)], GSK-3 , phospho-GSK3 [p-GSK3 (Ser21)], cyclin D1, and phospho-cyclin D1 [p-cyclin D1 (Thr 286)], with β-actin as a loading control. The experiments whose data are shown in this figure were repeated four times. KO, knockout.
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Epm2a silencing accelerates the growth of MEF in a GSK-3β-dependent fashion. Since GSK-3β is a substrate for laforin, a natural question is whether laforin-mediated growth inhibition is mediated by GSK-3β. We took a genetic approach to address this issue.
We transduced MEF with a lentivirus vector containing the blasticidin resistance gene in conjunction with or without Epm2a siRNA. The drug-resistant clones were screened for Epm2a expression by real-time PCR. Multiple independent Epm2a-silenced clones with a >10-fold reduction in the level of Epm2a mRNA were chosen for the study. As shown in Fig. 4a, relative to Hprt levels, a representative Epm2a-silenced clone had about a 20-fold reduction in the Epm2a mRNA level in comparison to those in the vector-transduced clones. Drastic reduction in the level of the laforin protein was also observed (Fig. 4b). Consistent with the GSK-3β phosphatase activity of laforin (32), GSK-3β is hyperphosphorylated in the Epm2a-silenced cell line in comparison with its level of phosphorylation in the vector-transduced cell line.
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FIG. 4. siRNA silencing of Epm2a promoted the growth of GSK-3β+/+ (a to d) but not GSK-3β–/– (e to h) MEF. (a and e) mRNA levels of Epm2a in Epm2a-silenced cells (siEpm2a1 and siEpm2a2) (black bars) and control cells (white bars). Data shown are relative amounts of transcripts after normalization against the amounts of total RNA based on the levels of Hprt mRNA. The mean with the control vector is artificially defined as 1.0. Data represent the means ± SD from triplicate samples and are representative of three to five clones used in the study. (b and f) Levels of laforin, GSK-3β, and phospho-GSK-3β [p-GSK-3β (Ser9)] from Epm2a-silenced and control GSK-3β+/+ (b) or GSK-3β–/– (f) cells by Western blot analysis. (c and g) Impact of Epm2a silencing on the growth of GSK-3β+/+ (c) or GSK-3β–/– (g) MEF. Equal numbers (1.5 x 104 cells/well) of Epm2a-silenced and control cells were seeded on 12-well plates and cultured with DMEM with 10% FBS for 0 to 6 days. The cells were treated with trypsin, and the number of viable cells was counted with a hemocytometer. Data shown were means and SD from five independent clones per group. (d and h) Colony formation assay for the effect of Epm2a siRNAs GSK-3β+/+ (d) or GSK-3β–/– (h) MEF. At 48 h after transfection with either the control vector or siRNA-expressing plasmids, the cells were trypsinized and plated in 100-mm dishes (1 x 104 cells per dish) and cultured in medium containing 5 µg/ml blasticidin. After 3 weeks, the cells were stained with crystal violet. Photographs of the cells are shown (d and h [top]), while the total number of colonies ( 20 cells) per plate (for each of the three plates) was counted under a microscope. Data represent the means ± SD from triplicate plates. The testing for these data was repeated at least three times.
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In parallel with the above-described experiments using WT GSK-3β+/+ MEF, we also silenced Epm2a in the MEF derived from the GSK-3β–/– littermate mice. As shown in Fig. 4e, in comparison to what occurred with control clones transduced with the vector alone, siRNA reduced Epm2a by more than 60 to 80%. Likewise, a substantial reduction in the laforin protein was also observed (Fig. 4f). Side-by-side analysis of both the growth curve (Fig. 4g) and colony formation capacity (Fig. 4 h) indicated that Epm2a silencing had no effect on the growth of GSK-3β–/– MEF. These results demonstrated that Epm2a-mediated growth inhibition strictly depended on GSK-3β.
A potential caveat of comparing WT and GSK-3β–/– cell lines is that the difference reported above may not be related to targeted mutation of GSK-3β. To address this issue, we reconstituted the GSK-3β–/– cell line with GSK-3β or the control vector. As shown in Fig. S2 in the supplemental material, reconstitution of GSK-3β restored the cellular response to siRNA silencing of Epm2a. Therefore, the difference observed between the GSK3-β+/+ and GSK-3β–/– cell lines can be attributed to GSK-3β.
To test whether Epm2a's effects on cell cycle progression depend on GSK-3β, we examined the cell cycle in MEF lines by using flow cytometry with propidium iodide staining. As shown in Table 1, at 24 h after serum starvation, approximately 90% of the WT cells were at rest in the G0/G1 phase and less than 7% of the cells were at the S phase, regardless of their Epm2a status. When the cells were cultured with medium containing 10% FBS for 8 h, 17.3% of the Epm2a-silenced cells entered the S phase while only 11.9% of the vector-transduced cells entered the S phase. The difference was more remarkable at 16 h, when 37.1% of the Epm2a-silenced cells and 19% of the vector-transduced cells entered S phase. By 24 h, when 47.2% of the vector-transduced cells entered the S phase, many of the Epm2a-silenced cells had reached the G2/M phase. However, Epm2a silencing made no difference in the cell cycle progression of GSK-3β–/– cells. Thus, Epm2a is a negative regulator for cell cycle progression. The more rapid progression explains the more rapid cell growth in the Epm2a-silenced cells.
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TABLE 1. GSK-3β-dependent regulation of cell cycle progression by laforina
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FIG. 5. The Epm2a-silenced cells upregulated cyclin D1 and increased Wnt signaling in GSK-3β+/+ MEF (a) but not in GSK-3β–/– MEF (b). The Epm2a-silenced and control cells were left hungry for 24 h without FBS (0 h). After serum starvation, the synchronized cells were incubated with 10% FBS for 8 h, 16 h, and 24 h. Then, these cells were harvested for Western blotting to determine their amounts of laforin, GSK-3β, phospho-GSK-3β [p-GSK-3β (Ser 9)], Akt, phospho-AKT [p-AKT (Ser473)], cyclin D1, phospho-cyclin D1 [p-cyclin D1 (Thr 286)], CDK4, β-actin, phospho-Rb [p-Rb (Ser795)], Rb, β-catenin, and SP1 antibodies. This experiment was repeated three times.
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To determine the functional significance of the cyclin D1-Rb signaling pathway, we evaluated the impact of the Epm2a siRNA on the transcript levels of Rb-E2F target genes. In the GSK-3β+/+ cells, the mRNA expression levels of E2F target genes such as cyclin A, cyclin E, MCM3, and PCNA (16, 23, 25, 26) were significantly higher in Epm2a-silenced cells than those in control cells after 10% FBS stimulation for 16 h (Fig. 6a). In the GSK-3β–/– cells, however, there were no significant differences in the levels of target gene expression between Epm2a-silenced and control groups (Fig. 6b). Therefore, the cyclin D1-Rb pathway likely plays a significant role in laforin-mediated cell cycle regulation. To substantiate this notion, we also compared the levels of cyclin E and PCNA in the WT and the Epm2a–/– thymocytes. As shown in Fig. 1c, targeted mutation of Epm2a resulted in 5.5-fold and 2.5-fold increases in cyclin E and PCNA, respectively. Thus, the Epm2-GSK-3β-regulated cyclin D1-Rb pathway significantly affects the expression of genes with important functions in cellular growth.
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FIG. 6. Laforin downregulates the transcription of E2F and TCF/LEF target genes in GSK-3β+/+ MEF (a) but not GSK-3β–/– MEF (b). The mRNA levels of these target genes were measured by real-time PCR. The mRNA was extracted from Epm2a-silenced and control cells, with 10% FBS stimulation for 16 h after serum starvation for 24 h (0 h). Hprt was used as an internal control. Data shown are means ± SD from triplicates and are representative of three independent experiments. *, P < 0.05.
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FIG. 7. The effect of GSK-3β inhibitors on cell cycle progression of WT and Epm2a–/– MEF. MEF from Epm2a WT and knockout (KO) mice were incubated with two GSK3β inhibitors, LiCl and BIO, for 48 h, followed by MTT assay (a) and Western blotting (b). (a) Data are means ± SD of results for three mice in each group. The testing of these data was repeated twice. O.D. 570, optical density at 570 nm. *, P < 0.05; **, P < 0.01.
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The data in this report demonstrated that silencing Epm2a by either siRNA or targeted mutation increased the growth rate in three independent models, including ex vivo thymocytes, primary culture of untransformed MEF, and immortalized MEF. The increased growth rate is associated with increased cyclin D1 function, such as the phosphorylation of Rb and the upregulation of Rb-targeted genes. Importantly, the Epm2a function depends on functional GSK-3β, as the effect is completely abrogated in GSK-3β–/– MEF. Collectively, these data revealed a missing link between laforin and cell cycle regulation.
It is of interest that laforin deficiency and GSK-3 inhibitors have the same effect on the growth rate of MEF. In addition, the two effects cannot be compounded, as laforin-deficient cells no longer respond to GSK-3 inhibitors. These data are best explained if the basis for increased proliferation in both cases is the same. Surprisingly, while the inhibitors appear to induce the phosphorylation of GSK-3β at Ser9, regardless of the presence of laforin, the impact on the levels of cyclin D1 and cell growth can be observed only if laforin is also present. It appears that in the absence of laforin, the GSK-3 inhibitors may even reduce the levels of cyclin D1 somewhat. One way that these data can be reconciled is that modulation of GSK-3β activity can be achieved by a laforin-dependent mechanism that is unrelated to the phosphorylation of Ser9. In this regard, it is intriguing that GSK-3β repression of Wnt signaling can be abrogated by the phosphorylation of a C-terminal Ser (30). Alternatively, the impact of GSK-3β inhibition on cell growth may have reached the maximum if laforin is absent. Additional studies are needed to clarify the mechanism.
Theoretically, there are at least two mechanisms by which laforin-GSK-3β regulates the levels of cyclin D1. First, as a positive regulator of GSK-3β activity (17, 32), laforin can negatively regulate Wnt signaling, as we have reported previously (32). Since the dominant negative mutant of TCF prevented the increase of the cyclin D1 transcript, we suggest that the negative regulation of cyclin D1 mRNA levels by laforin is mediated by Wnt signaling (see Fig. S3 in the supplemental material). In addition, since GSK-3β is known to regulate the levels of cyclin D1 by direct phosphorylation (3, 7), it is plausible that by modulating GSK-3β activity, laforin regulates the stability of cyclin D1.
This study is supported by grants from the American Cancer Society (P.Z.), the U.S. Department of Defense (P.Z.), the National Institutes of Health (Y.L.), and the Canadian Institutes of Health Research (B.A.M.).
Published ahead of print on 29 September 2008. ![]()
Supplemental material for this article may be found at http://mcb.asm.org/. ![]()
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