Previous Article | Next Article 
Molecular and Cellular Biology, February 1999, p. 1056-1067, Vol. 19, No. 2
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
A Complex Containing RNA Polymerase II, Paf1p,
Cdc73p, Hpr1p, and Ccr4p Plays a Role in Protein Kinase C
Signaling
Meiping
Chang,1
Delores
French-Cornay,1
Hua-ying
Fan,2
Hannah
Klein,2
Clyde L.
Denis,3 and
Judith A.
Jaehning1,*
Department of Biochemistry and Molecular
Genetics and Program in Molecular Biology, University of Colorado
Health Sciences Center, Denver, Colorado 802621;
Department of Biochemistry and Molecular Biology,
University of New Hampshire, Durham, New Hampshire
038243; and
Department of
Biochemistry and Kaplan Cancer Center, New York University Medical
Center, New York, New York 100162
Received 19 August 1998/Returned for modification 2 October
1998/Accepted 27 October 1998
Yeast contains at least two complex forms of RNA polymerase II (Pol
II), one including the Srbps and a second biochemically distinct form
defined by the presence of Paf1p and Cdc73p (X. Shi et al., Mol. Cell.
Biol. 17:1160-1169, 1997). In this work we demonstrate that Ccr4p and
Hpr1p are components of the Paf1p-Cdc73p-Pol II complex. We have found
many synthetic genetic interactions between factors within the
Paf1p-Cdc73p complex, including the lethality of paf1
ccr4
, paf1
hpr1
, ccr4
hpr1
, and ccr4
gal11
double mutants. In
addition, paf1
and ccr4
are lethal in
combination with srb5
, indicating that the factors
within and between the two RNA polymerase II complexes have overlapping essential functions. We have used differential display to identify several genes whose expression is affected by mutations in components of the Paf1p-Cdc73p-Pol II complex. Additionally, as previously observed for hpr1
, deleting PAF1 or
CDC73 leads to elevated recombination between direct
repeats. The paf1
and ccr4
mutations, as
well as gal11
, demonstrate sensitivity to cell
wall-damaging agents, rescue of the temperature-sensitive phenotype by
sorbitol, and reduced expression of genes involved in cell wall
biosynthesis. This unusual combination of effects on recombination and
cell wall integrity has also been observed for mutations in genes in the Pkc1p-Mpk1p kinase cascade. Consistent with a role for this novel
form of RNA polymerase II in the Pkc1p-Mpk1p signaling pathway, we find
that paf1
mpk1
and paf1
pkc1
double
mutants do not demonstrate an enhanced phenotype relative to the single
mutants. Our observation that the Mpk1p kinase is fully active in a
paf1
strain indicates that the Paf1p-Cdc73p complex may
function downstream of the Pkc1p-Mpk1p cascade to regulate the
expression of a subset of yeast genes.
*
Corresponding author. Mailing address: Department of
Biochemistry and Molecular Genetics and Program in Molecular Biology, University of Colorado Health Sciences Center, Denver, CO 80262. Phone:
(303) 315-3004. Fax: (303) 315-3326. E-mail:
Judith.Jaehning{at}UCHSC.edu.
Molecular and Cellular Biology, February 1999, p. 1056-1067, Vol. 19, No. 2
0270-7306/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.
This article has been cited by other articles:
-
Hossain, M. A., Claggett, J. M., Nguyen, T., Johnson, T. L.
(2009). The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA. RNA
15: 1515-1527
[Abstract]
[Full Text]
-
Wang, X., Chinnam, M., Wang, J., Wang, Y., Zhang, X., Marcon, E., Moens, P., Goodrich, D. W.
(2009). Thoc1 Deficiency Compromises Gene Expression Necessary for Normal Testis Development in the Mouse. Mol. Cell. Biol.
29: 2794-2803
[Abstract]
[Full Text]
-
Gottipati, P., Helleday, T.
(2009). Transcription-associated recombination in eukaryotes: link between transcription, replication and recombination. Mutagenesis
24: 203-210
[Abstract]
[Full Text]
-
Zhang, Y., Sikes, M. L., Beyer, A. L., Schneider, D. A.
(2009). The Paf1 complex is required for efficient transcription elongation by RNA polymerase I. Proc. Natl. Acad. Sci. USA
106: 2153-2158
[Abstract]
[Full Text]
-
Mozdy, A. D., Podell, E. R., Cech, T. R.
(2008). Multiple Yeast Genes, Including Paf1 Complex Genes, Affect Telomere Length via Telomerase RNA Abundance. Mol. Cell. Biol.
28: 4152-4161
[Abstract]
[Full Text]
-
Gibney, P. A., Fries, T., Bailer, S. M., Morano, K. A.
(2008). Rtr1 Is the Saccharomyces cerevisiae Homolog of a Novel Family of RNA Polymerase II-Binding Proteins. Eukaryot Cell
7: 938-948
[Abstract]
[Full Text]
-
Manukyan, A., Zhang, J., Thippeswamy, U., Yang, J., Zavala, N., Mudannayake, M. P., Asmussen, M., Schneider, C., Schneider, B. L.
(2008). Ccr4 Alters Cell Size in Yeast by Modulating the Timing of CLN1 and CLN2 Expression. Genetics
179: 345-357
[Abstract]
[Full Text]
-
Abe, F., Minegishi, H.
(2008). Global Screening of Genes Essential for Growth in High-Pressure and Cold Environments: Searching for Basic Adaptive Strategies Using a Yeast Deletion Library. Genetics
178: 851-872
[Abstract]
[Full Text]
-
Panepinto, J. C., Komperda, K. W., Hacham, M., Shin, S., Liu, X., Williamson, P. R.
(2007). Binding of Serum Mannan Binding Lectin to a Cell Integrity-Defective Cryptococcus neoformans ccr4{Delta} Mutant. Infect. Immun.
75: 4769-4779
[Abstract]
[Full Text]
-
Li, Y., Lin, A. W., Zhang, X., Wang, Y., Wang, X., Goodrich, D. W.
(2007). Cancer Cells and Normal Cells Differ in Their Requirements for Thoc1. Cancer Res.
67: 6657-6664
[Abstract]
[Full Text]
-
Laribee, R. N., Shibata, Y., Mersman, D. P., Collins, S. R., Kemmeren, P., Roguev, A., Weissman, J. S., Briggs, S. D., Krogan, N. J., Strahl, B. D.
(2007). CCR4/NOT complex associates with the proteasome and regulates histone methylation. Proc. Natl. Acad. Sci. USA
104: 5836-5841
[Abstract]
[Full Text]
-
Mulder, K. W., Brenkman, A. B., Inagaki, A., van den Broek, N. J. F., Marc Timmers, H. Th.
(2007). Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex. Nucleic Acids Res
35: 2428-2439
[Abstract]
[Full Text]
-
Zakrzewska, A., Boorsma, A., Delneri, D., Brul, S., Oliver, S. G., Klis, F. M.
(2007). Cellular Processes and Pathways That Protect Saccharomyces cerevisiae Cells against the Plasma Membrane-Perturbing Compound Chitosan. Eukaryot Cell
6: 600-608
[Abstract]
[Full Text]
-
Woolstencroft, R. N., Beilharz, T. H., Cook, M. A., Preiss, T., Durocher, D., Tyers, M.
(2006). Ccr4 contributes to tolerance of replication stress through control of CRT1 mRNA poly(A) tail length. J. Cell Sci.
119: 5178-5192
[Abstract]
[Full Text]
-
Game, J. C., Williamson, M. S., Spicakova, T., Brown, J. M.
(2006). The RAD6/BRE1 Histone Modification Pathway in Saccharomyces Confers Radiation Resistance Through a RAD51-Dependent Process That Is Independent of RAD18. Genetics
173: 1951-1968
[Abstract]
[Full Text]
-
Hershkovits, G., Bangio, H., Cohen, R., Katcoff, D. J.
(2006). Recruitment of mRNA cleavage/polyadenylation machinery by the yeast chromatin protein Sin1p/Spt2p. Proc. Natl. Acad. Sci. USA
103: 9808-9813
[Abstract]
[Full Text]
-
Wang, X., Chang, Y., Li, Y., Zhang, X., Goodrich, D. W.
(2006). Thoc1/Hpr1/p84 Is Essential for Early Embryonic Development in the Mouse.. Mol. Cell. Biol.
26: 4362-4367
[Abstract]
[Full Text]
-
Biswas, D., Yu, Y., Mitra, D., Stillman, D. J.
(2006). Genetic Interactions Between Nhp6 and Gcn5 With Mot1 and the Ccr4-Not Complex That Regulate Binding of TATA-Binding Protein in Saccharomyces cerevisiae. Genetics
172: 837-849
[Abstract]
[Full Text]
-
Adelman, K., Wei, W., Ardehali, M. B., Werner, J., Zhu, B., Reinberg, D., Lis, J. T.
(2006). Drosophila Paf1 Modulates Chromatin Structure at Actively Transcribed Genes. Mol. Cell. Biol.
26: 250-260
[Abstract]
[Full Text]
-
Li, Y., Wang, X., Zhang, X., Goodrich, D. W.
(2005). Human hHpr1/p84/Thoc1 Regulates Transcriptional Elongation and Physically Links RNA Polymerase II and RNA Processing Factors. Mol. Cell. Biol.
25: 4023-4033
[Abstract]
[Full Text]
-
Rozenblatt-Rosen, O., Hughes, C. M., Nannepaga, S. J., Shanmugam, K. S., Copeland, T. D., Guszczynski, T., Resau, J. H., Meyerson, M.
(2005). The Parafibromin Tumor Suppressor Protein Is Part of a Human Paf1 Complex. Mol. Cell. Biol.
25: 612-620
[Abstract]
[Full Text]
-
Porter, S. E., Penheiter, K. L., Jaehning, J. A.
(2005). Separation of the Saccharomyces cerevisiae Paf1 Complex from RNA Polymerase II Results in Changes in Its Subnuclear Localization. Eukaryot Cell
4: 209-220
[Abstract]
[Full Text]
-
Hieronymus, H., Yu, M. C., Silver, P. A.
(2004). Genome-wide mRNA surveillance is coupled to mRNA export. Genes Dev.
18: 2652-2662
[Abstract]
[Full Text]
-
Westmoreland, T. J., Marks, J. R., Olson, J. A. Jr., Thompson, E. M., Resnick, M. A., Bennett, C. B.
(2004). Cell Cycle Progression in G1 and S Phases Is CCR4 Dependent following Ionizing Radiation or Replication Stress in Saccharomyces cerevisiae. Eukaryot Cell
3: 430-446
[Abstract]
[Full Text]
-
Kaeberlein, M., Andalis, A. A., Liszt, G. B., Fink, G. R., Guarente, L.
(2004). Saccharomyces cerevisiae SSD1-V Confers Longevity by a Sir2p-Independent Mechanism. Genetics
166: 1661-1672
[Abstract]
[Full Text]
-
THOMSEN, R., LIBRI, D., BOULAY, J., ROSBASH, M., JENSEN, T. H.
(2003). Localization of nuclear retained mRNAs in Saccharomyces cerevisiae. RNA
9: 1049-1057
[Abstract]
[Full Text]
-
Swanson, M. J., Qiu, H., Sumibcay, L., Krueger, A., Kim, S.-j., Natarajan, K., Yoon, S., Hinnebusch, A. G.
(2003). A Multiplicity of Coactivators Is Required by Gcn4p at Individual Promoters In Vivo. Mol. Cell. Biol.
23: 2800-2820
[Abstract]
[Full Text]
-
Merker, R. J., Klein, H. L.
(2002). Role of Transcription in Plasmid Maintenance in the hpr1{Delta} Mutant of Saccharomyces cerevisiae. Mol. Cell. Biol.
22: 8763-8773
[Abstract]
[Full Text]
-
Zenklusen, D., Vinciguerra, P., Wyss, J.-C., Stutz, F.
(2002). Stable mRNP Formation and Export Require Cotranscriptional Recruitment of the mRNA Export Factors Yra1p and Sub2p by Hpr1p. Mol. Cell. Biol.
22: 8241-8253
[Abstract]
[Full Text]
-
Libri, D., Dower, K., Boulay, J., Thomsen, R., Rosbash, M., Jensen, T. H.
(2002). Interactions between mRNA Export Commitment, 3'-End Quality Control, and Nuclear Degradation. Mol. Cell. Biol.
22: 8254-8266
[Abstract]
[Full Text]
-
Porter, S. E., Washburn, T. M., Chang, M., Jaehning, J. A.
(2002). The Yeast Paf1-RNA Polymerase II Complex Is Required for Full Expression of a Subset of Cell Cycle-Regulated Genes. Eukaryot Cell
1: 830-842
[Abstract]
[Full Text]
-
Hammell, C. M., Gross, S., Zenklusen, D., Heath, C. V., Stutz, F., Moore, C., Cole, C. N.
(2002). Coupling of Termination, 3' Processing, and mRNA Export. Mol. Cell. Biol.
22: 6441-6457
[Abstract]
[Full Text]
-
Mueller, C. L., Jaehning, J. A.
(2002). Ctr9, Rtf1, and Leo1 Are Components of the Paf1/RNA Polymerase II Complex. Mol. Cell. Biol.
22: 1971-1980
[Abstract]
[Full Text]
-
Kimura, M., Suzuki, H., Ishihama, A.
(2002). Formation of a Carboxy-Terminal Domain Phosphatase (Fcp1)/TFIIF/RNA Polymerase II (pol II) Complex in Schizosaccharomyces pombe Involves Direct Interaction between Fcp1 and the Rpb4 Subunit of pol II. Mol. Cell. Biol.
22: 1577-1588
[Abstract]
[Full Text]
-
Merker, R. J., Klein, H. L.
(2002). hpr1{Delta} Affects Ribosomal DNA Recombination and Cell Life Span in Saccharomyces cerevisiae. Mol. Cell. Biol.
22: 421-429
[Abstract]
[Full Text]
-
Kaeberlein, M., Guarente, L.
(2002). Saccharomyces cerevisiae MPT5 and SSD1 Function in Parallel Pathways to Promote Cell Wall Integrity. Genetics
160: 83-95
[Abstract]
[Full Text]
-
Chavez, S., Garcia-Rubio, M., Prado, F., Aguilera, A.
(2001). Hpr1 Is Preferentially Required for Transcription of Either Long or G+C-Rich DNA Sequences in Saccharomyces cerevisiae. Mol. Cell. Biol.
21: 7054-7064
[Abstract]
[Full Text]
-
Bhoite, L. T., Yu, Y., Stillman, D. J.
(2001). The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II. Genes Dev.
15: 2457-2469
[Abstract]
[Full Text]
-
Howard, S. C., Chang, Y.-W., Budovskaya, Y. V., Herman, P. K.
(2001). The Ras/PKA Signaling Pathway of Saccharomyces cerevisiae Exhibits a Functional Interaction With the Sin4p Complex of the RNA Polymerase II Holoenzyme. Genetics
159: 77-89
[Abstract]
[Full Text]
-
Fan, H.-Y., Merker, R. J., Klein, H. L.
(2001). High-Copy-Number Expression of Sub2p, a Member of the RNA Helicase Superfamily, Suppresses hpr1-Mediated Genomic Instability. Mol. Cell. Biol.
21: 5459-5470
[Abstract]
[Full Text]
-
Ni, L., Snyder, M.
(2001). A Genomic Study of the Bipolar Bud Site Selection Pattern in Saccharomyces cerevisiae. Mol. Biol. Cell
12: 2147-2170
[Abstract]
[Full Text]
-
Denis, C. L., Chiang, Y.-C., Cui, Y., Chen, J.
(2001). Genetic Evidence Supports a Role for the Yeast CCR4-NOT Complex in Transcriptional Elongation. Genetics
158: 627-634
[Abstract]
[Full Text]
-
Hernando, Y., Carter, A. T., Sickinger, S., Schweizer, M.
(2001). Characterization of the Promoter of PRS1 in Saccharomyces cerevisiae Identifies Three Regions Potentially Involved in Control of Expression. J. Bacteriol.
183: 795-799
[Abstract]
[Full Text]
-
Gallardo, M., Aguilera, A.
(2001). A New Hyperrecombination Mutation Identifies a Novel Yeast Gene, THP1, Connecting Transcription Elongation With Mitotic Recombination. Genetics
157: 79-89
[Abstract]
[Full Text]
-
Verma, R., Chen, S., Feldman, R., Schieltz, D., Yates, J., Dohmen, J., Deshaies, R. J.
(2000). Proteasomal Proteomics: Identification of Nucleotide-sensitive Proteasome-interacting Proteins by Mass Spectrometric Analysis of Affinity-purified Proteasomes. Mol. Biol. Cell
11: 3425-3439
[Abstract]
[Full Text]
-
Albert, T. K., Lemaire, M., van Berkum, N. L., Gentz, R., Collart, M. A., Timmers, H. Th. M.
(2000). Isolation and characterization of human orthologs of yeast CCR4-NOT complex subunits. Nucleic Acids Res
28: 809-817
[Abstract]
[Full Text]
-
Bai, Y., Salvadore, C., Chiang, Y.-C., Collart, M. A., Liu, H.-Y., Denis, C. L.
(1999). The CCR4 and CAF1 Proteins of the CCR4-NOT Complex Are Physically and Functionally Separated from NOT2, NOT4, and NOT5. Mol. Cell. Biol.
19: 6642-6651
[Abstract]
[Full Text]
-
Schneiter, R., Guerra, C. E., Lampl, M., Gogg, G., Kohlwein, S. D., Klein, H. L.
(1999). The Saccharomyces cerevisiae Hyperrecombination Mutant hpr1Delta Is Synthetically Lethal with Two Conditional Alleles of the Acetyl Coenzyme A Carboxylase Gene and Causes a Defect in Nuclear Export of Polyadenylated RNA. Mol. Cell. Biol.
19: 3415-3422
[Abstract]
[Full Text]
-
Pype, S., Declercq, W., Ibrahimi, A., Michiels, C., Van Rietschoten, J. G. I., Dewulf, N., de Boer, M., Vandenabeele, P., Huylebroeck, D., Remacle, J. E.
(2000). TTRAP, a Novel Protein That Associates with CD40, Tumor Necrosis Factor (TNF) Receptor-75 and TNF Receptor-associated Factors (TRAFs), and That Inhibits Nuclear Factor-kappa B Activation. J. Biol. Chem.
275: 18586-18593
[Abstract]
[Full Text]
-
Liu, Y., Ranish, J. A., Aebersold, R., Hahn, S.
(2001). Yeast Nuclear Extract Contains Two Major Forms of RNA Polymerase II Mediator Complexes. J. Biol. Chem.
276: 7169-7175
[Abstract]
[Full Text]
-
Maillet, L., Collart, M. A.
(2002). Interaction between Not1p, a Component of the Ccr4-Not Complex, a Global Regulator of Transcription, and Dhh1p, a Putative RNA Helicase. J. Biol. Chem.
277: 2835-2842
[Abstract]
[Full Text]