This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Services
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrowReprints and Permissions
Right arrow Copyright Information
Right arrow Books from ASM Press
Right arrow MicrobeWorld
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Thyagarajan, B.
Right arrow Articles by Calos, M. P.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Thyagarajan, B.
Right arrow Articles by Calos, M. P.

 Previous Article  |  Next Article 

Molecular and Cellular Biology, June 2001, p. 3926-3934, Vol. 21, No. 12
0270-7306/01/$04.00+0   DOI: 10.1128/MCB.21.12.3926-3934.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.

Site-Specific Genomic Integration in Mammalian Cells Mediated by Phage phi C31 Integrase

Bhaskar Thyagarajan, Eric C. Olivares, Roger P. Hollis, Daniel S. Ginsburg, and Michele P. Calos*

Department of Genetics, Stanford University School of Medicine, Stanford, California 94305-5120

Received 12 January 2001/Returned for modification 21 February 2001/Accepted 23 March 2001

We previously established that the phage phi C31 integrase, a site-specific recombinase, mediates efficient integration in the human cell environment at attB and attP phage attachment sites on extrachromosomal vectors. We show here that phage attP sites inserted at various locations in human and mouse chromosomes serve as efficient targets for precise site-specific integration. Moreover, we characterize native "pseudo" attP sites in the human and mouse genomes that also mediate efficient integrase-mediated integration. These sites have partial sequence identity to attP. Such sites form naturally occurring targets for integration. This phage integrase-mediated reaction represents an effective site-specific integration system for higher cells and may be of value in gene therapy and other chromosome engineering strategies.


* Corresponding author. Mailing address: Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305-5120. Phone: (650) 723-5558. Fax: (650) 725-1534. E-mail: calos{at}stanford.edu.


Molecular and Cellular Biology, June 2001, p. 3926-3934, Vol. 21, No. 12
0270-7306/01/$04.00+0   DOI: 10.1128/MCB.21.12.3926-3934.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.



This article has been cited by other articles:

  • Nyabi, O., Naessens, M., Haigh, K., Gembarska, A., Goossens, S., Maetens, M., De Clercq, S., Drogat, B., Haenebalcke, L., Bartunkova, S., De Vos, I., De Craene, B., Karimi, M., Berx, G., Nagy, A., Hilson, P., Marine, J.-C., Haigh, J. J. (2009). Efficient mouse transgenesis using Gateway-compatible ROSA26 locus targeting vectors and F1 hybrid ES cells. Nucleic Acids Res 37: e55-e55 [Abstract] [Full Text]  
  • Gordley, R. M., Gersbach, C. A., Barbas, C. F. III (2009). Synthesis of programmable integrases. Proc. Natl. Acad. Sci. USA 106: 5053-5058 [Abstract] [Full Text]  
  • Sangiorgi, E., Shuhua, Z., Capecchi, M. R. (2008). In vivo evaluation of PhiC31 recombinase activity using a self-excision cassette. Nucleic Acids Res 36: e134-e134 [Abstract] [Full Text]  
  • Maucksch, C., Aneja, M. K., Hennen, E., Bohla, A., Hoffmann, F., Elfinger, M., Rosenecker, J., Rudolph, C. (2008). Cell type differences in activity of the Streptomyces bacteriophage {phi}C31 integrase. Nucleic Acids Res 36: 5462-5471 [Abstract] [Full Text]  
  • Rowley, P. A., Smith, M. C. A., Younger, E., Smith, M. C. M. (2008). A motif in the C-terminal domain of {phi}C31 integrase controls the directionality of recombination. Nucleic Acids Res 36: 3879-3891 [Abstract] [Full Text]  
  • Sharma, N., Moldt, B., Dalsgaard, T., Jensen, T. G., Mikkelsen, J. G. (2008). Regulated gene insertion by steroid-induced {Phi}C31 integrase. Nucleic Acids Res 36: e67-e67 [Abstract] [Full Text]  
  • Xu, Z., Lee, N. C. O., Dafhnis-Calas, F., Malla, S., Smith, M. C. M., Brown, W. R. A. (2008). Site-specific recombination in Schizosaccharomyces pombe and systematic assembly of a 400kb transgene array in mammalian cells using the integrase of Streptomyces phage {phi}BT1. Nucleic Acids Res 36: e9-e9 [Abstract] [Full Text]  
  • Venken, K. J. T., Bellen, H. J. (2007). Transgenesis upgrades for Drosophila melanogaster. Development 134: 3571-3584 [Abstract] [Full Text]  
  • Gupta, M., Till, R., Smith, M. C. M. (2007). Sequences in attB that affect the ability of {phi}C31 integrase to synapse and to activate DNA cleavage. Nucleic Acids Res 35: 3407-3419 [Abstract] [Full Text]  
  • Chen, J.-z., Ji, C.-n., Xu, G.-l., Pang, R.-y., Yao, J.-h., Zhu, H.-z., Xue, J.-l., Jia, W. (2006). DAXX interacts with phage {Phi}C31 integrase and inhibits recombination. Nucleic Acids Res 34: 6298-6304 [Abstract] [Full Text]  
  • Liu, L., Liu, H., Visner, G., Fletcher, B. S. (2006). Sleeping Beauty-mediated eNOS gene therapy attenuates monocrotaline-induced pulmonary hypertension in rats. FASEB J. 20: 2594-2596 [Abstract] [Full Text]  
  • Bolusani, S., Ma, C.-H., Paek, A., Konieczka, J. H., Jayaram, M., Voziyanov, Y. (2006). Evolution of variants of yeast site-specific recombinase Flp that utilize native genomic sequences as recombination target sites. Nucleic Acids Res 34: 5259-5269 [Abstract] [Full Text]  
  • Chalberg, T. W., Vankov, A., Molnar, F. E., Butterwick, A. F., Huie, P., Calos, M. P., Palanker, D. V. (2006). Gene transfer to rabbit retina with electron avalanche transfection.. IOVS 47: 4083-4090 [Abstract] [Full Text]  
  • Maragathavally, K. J., Kaminski, J. M., Coates, C. J. (2006). Chimeric Mos1 and piggyBac transposases result in site-directed integration. FASEB J. 20: 1880-1882 [Abstract] [Full Text]  
  • Bertoni, C., Jarrahian, S., Wheeler, T. M., Li, Y., Olivares, E. C., Calos, M. P., Rando, T. A. (2006). Enhancement of plasmid-mediated gene therapy for muscular dystrophy by directed plasmid integration. Proc. Natl. Acad. Sci. USA 103: 419-424 [Abstract] [Full Text]  
  • Chen, L., Woo, S. L. C. (2005). Complete and persistent phenotypic correction of phenylketonuria in mice by site-specific genome integration of murine phenylalanine hydroxylase cDNA. Proc. Natl. Acad. Sci. USA 102: 15581-15586 [Abstract] [Full Text]  
  • Malla, S., Dafhnis-Calas, F., Brookfield, J. F. Y., Smith, M. C. M., Brown, W. R. A. (2005). Rearranging the centromere of the human Y chromosome with {varphi}C31 integrase. Nucleic Acids Res 33: 6101-6113 [Abstract] [Full Text]  
  • Chalberg, T. W., Genise, H. L., Vollrath, D., Calos, M. P. (2005). {phi}C31 Integrase Confers Genomic Integration and Long-Term Transgene Expression in Rat Retina. IOVS 46: 2140-2146 [Abstract] [Full Text]  
  • Lindenbaum, M., Perkins, E., Csonka, E., Fleming, E., Garcia, L., Greene, A., Gung, L., Hadlaczky, G., Lee, E., Leung, J., MacDonald, N., Maxwell, A., Mills, K., Monteith, D., Perez, C. F., Shellard, J., Stewart, S., Stodola, T., Vandenborre, D., Vanderbyl, S., Ledebur, H. C. Jr (2004). A mammalian artificial chromosome engineering system (ACE System) applicable to biopharmaceutical protein production, transgenesis and gene-based cell therapy. Nucleic Acids Res 32: e172-e172 [Abstract] [Full Text]  
  • Groth, A. C., Fish, M., Nusse, R., Calos, M. P. (2004). Construction of Transgenic Drosophila by Using the Site-Specific Integrase From Phage {phi}C31. Genetics 166: 1775-1782 [Abstract] [Full Text]  
  • Khodarev, N. N., Beckett, M., Labay, E., Darga, T., Roizman, B., Weichselbaum, R. R. (2004). STAT1 is overexpressed in tumors selected for radioresistance and confers protection from radiation in transduced sensitive cells. Proc. Natl. Acad. Sci. USA 101: 1714-1719 [Abstract] [Full Text]  
  • Chilton, M.-D. M., Que, Q. (2003). Targeted Integration of T-DNA into the Tobacco Genome at Double-Stranded Breaks: New Insights on the Mechanism of T-DNA Integration. Plant Physiol. 133: 956-965 [Abstract] [Full Text]  
  • Corona, T., Bao, Q., Christ, N., Schwartz, T., Li, J., Droge, P. (2003). Activation of site-specific DNA integration in human cells by a single chain integration host factor. Nucleic Acids Res 31: 5140-5148 [Abstract] [Full Text]  
  • Combes, P., Till, R., Bee, S., Smith, M. C. M. (2002). The Streptomyces Genome Contains Multiple Pseudo-attB Sites for the {phi}C31-Encoded Site-Specific Recombination System. J. Bacteriol. 184: 5746-5752 [Abstract] [Full Text]  
  • KAMINSKI, J. M., HUBER, M. R., SUMMERS, J. B., WARD, M. B. (2002). Design of a nonviral vector for site-selective, efficient integration into the human genome. FASEB J. 16: 1242-1247 [Abstract] [Full Text]  
  • Stoll, S. M., Ginsburg, D. S., Calos, M. P. (2002). Phage TP901-1 Site-Specific Integrase Functions in Human Cells. J. Bacteriol. 184: 3657-3663 [Abstract] [Full Text]  
  • Sclimenti, C. R., Thyagarajan, B., Calos, M. P. (2001). Directed evolution of a recombinase for improved genomic integration at a native human sequence. Nucleic Acids Res 29: 5044-5051 [Abstract] [Full Text]