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Molecular and Cellular Biology, February 2009, p. 626-639, Vol. 29, No. 3
0270-7306/09/$08.00+0 doi:10.1128/MCB.00423-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Will McRae,1
Zeki Topcu,2 and
Michael J. McEachern1*
Department of Genetics, Fred Davison Life Science Complex, University of Georgia, Athens, Georgia 30602-7223,1 Department of Pharmaceutical Biotechnology, Ege University, Bornova Izmir 35100, Turkey2
Received 13 March 2008/ Returned for modification 22 July 2008/ Accepted 13 November 2008
Some human cancers maintain telomeres using alternative lengthening of telomeres (ALT), a process thought to be due to recombination. In Kluyveromyces lactis mutants lacking telomerase, recombinational telomere elongation (RTE) is induced at short telomeres but is suppressed once telomeres are moderately elongated by RTE. Recent work has shown that certain telomere capping defects can trigger a different type of RTE that results in much more extensive telomere elongation that is reminiscent of human ALT cells. In this study, we generated telomeres composed of either of two types of mutant telomeric repeats, Acc and SnaB, that each alter the binding site for the telomeric protein Rap1. We show here that arrays of both types of mutant repeats present basally on a telomere were defective in negatively regulating telomere length in the presence of telomerase. Similarly, when each type of mutant repeat was spread to all chromosome ends in cells lacking telomerase, they led to the formation of telomeres produced by RTE that were much longer than those seen in cells with only wild-type telomeric repeats. The Acc repeats produced the more severe defect in both types of telomere maintenance, consistent with their more severe Rap1 binding defect. Curiously, although telomerase deletion mutants with telomeres composed of Acc repeats invariably showed extreme telomere elongation, they often also initially showed persistent very short telomeres with few or no Acc repeats. We suggest that these result from futile cycles of recombinational elongation and truncation of the Acc repeats from the telomeres. The presence of extensive 3' overhangs at mutant telomeres suggests that Rap1 may normally be involved in controlling 5' end degradation.
Published ahead of print on 24 November 2008.
Present address: Department of Pharmaceutical Chemistry, University of California, San Francisco, 600 16th Street, Suite 518, San Francisco, CA 94143-2280.
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