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Articles

Epigenetic Activation of the Human Growth Hormone Gene Cluster during Placental Cytotrophoblast Differentiation

Atsushi P. Kimura, Daria Sizova, Stuart Handwerger, Nancy E. Cooke, Stephen A. Liebhaber
Atsushi P. Kimura
1Departments of Genetics and Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104
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Daria Sizova
1Departments of Genetics and Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104
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Stuart Handwerger
2Department of Endocrinology, Children's Hospital Medical Center, and Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, Ohio 45229
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Nancy E. Cooke
1Departments of Genetics and Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104
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Stephen A. Liebhaber
1Departments of Genetics and Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104
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  • For correspondence: liebhabe@mail.med.upenn.edu
DOI: 10.1128/MCB.00273-07
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  • FIG. 1.
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    FIG. 1.

    Expression of the hGH-hCS cluster genes in human placental cell lines. (A) Structure of the hGH gene cluster and its LCR. The hGH cluster is composed of five conserved genes, including the pituitary-specific hGH-N gene and placenta-specific hCS-L, hCS-A, hGH-V, and hCS-B genes. The expression of the hGH cluster genes is regulated by its LCR, which is far upstream of the cluster and overlaps two other tissue-specific genes, the B-lymphocyte-specific CD79b gene and the muscle-specific SCN4A gene. The LCR includes five DNase I-HSs, indicated as vertical arrows. The bent arrows above each gene indicate the transcriptional direction of the gene. (B) Expression of the early placental marker gene hCGβ was detected in BeWo cells by Northern analysis. Total RNAs from CCDsk-25, JEG3, and BeWo cell lines were fractionated in a formaldehyde-agarose gel and transferred to a nitrocellulose membrane. The blot was hybridized with a 32P-labeled hGH-hCS probe that detects all five genes. The blot was also hybridized with a probe for the early placental hCGβ mRNA. The constitutive rpL32 gene was used as a loading control. The signals were visualized by autoradiography. (C) Expression of the placental hGH-hCS genes is activated in BeWo cells. Total RNAs were purified and amplified by PCR. These starting PCR products are shown (top panel). The products were next digested with TaqI to distinguish the mRNAs corresponding to each of the hGH cluster genes (middle panel). Amplification of rpL32 mRNA was used as a positive control (bottom panel).

  • FIG. 2.
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    FIG. 2.

    Induction kinetics of the placental hGH-hCS genes in BeWo cells. (A) Histone deacetylase inhibition with TSA failed to induce BeWo cell gene expression. The cells were treated with the indicated concentrations of TSA for 12 h. Total RNA was analyzed by Northern blotting using ethanol as a vehicle control. Hybridization probes used are indicated to the right of each panel. (B) FSK-induced BeWo cell syncytialization resulted in only a moderate increase in hGH-hCS expression. BeWo cells were induced to syncytialize by culturing them in the presence of 80 μM FSK for 4 days. Total RNA from the treated cells was used for Northern blot analyses. The syncytialization was confirmed by hCGβ induction. Dimethyl sulfoxide (DMSO) was the vehicle control. (C) Placental hGH-hCS expression was induced by long-term culture of BeWo cells. The cells were plated at a high density and incubated without chemical additives for 32 days. Total RNA (20 μg) was collected every 4 days for analysis by Northern blotting. (D) The BeWo hGH-hCS transcript profile after 32 day of culture was qualitatively similar to that in term placentas. RT-PCR analysis was performed as described for Fig. 1C but with total RNA (5 μg) from BeWo cells at days 0 and 32 of culture and from human term placental villi. hCS-A, hCS-B, and hGH-V mRNAs were detected in all three samples; no hGH-N or hCS-L signals were observed. (E) Matrigel coating of the culture plates enhanced hGH-hCS activation in BeWo cells. The BeWo cells were cultured on Matrigel-coated dishes for 32 days, and total RNA was collected every 8 days, as described for panel C above. The Northern blot analysis showed higher and faster induction of hGH-hCS genes than that shown in panel C when cells were grown on Matrigel.

  • FIG. 3.
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    FIG. 3.

    hGH-hCS genes were induced in ex vivo cultures of primary human placental CTBs. (A) Expression of the hGH cluster genes in primary placental CTB cell culture. The CTBs were cultured in the presence of second-trimester maternal serum for 6 days to induce spontaneous differentiation into syncytial cells capable of expressing the hGH-hCS genes. Total RNA was prepared from daily aliquots and analyzed by Northern blotting. Probes used are indicated to the right of the autoradiographs. (B) hCS-A, hCS-B, and hGH-V are expressed by the induced CTBs. RT-PCR analysis was conducted with RNA from CTBs at days 0 and 2 of culture. The PCR products were digested with TaqI and analyzed as described for Fig. 1C. The hCS-A and hCS-B mRNAs were detected at day 0, and their expression and that of hGH-V were induced by day 2. (C) Quantitative comparison of hGH-hCS expression levels among the placental model systems used in this study. Northern blot analysis was performed on total RNA from human term placenta, cultured primary CTBs at day 6 (CTB 6 d), and day 32 BeWo cells (BeWo 32 d). Relative hGH-hCS mRNA levels, estimated using the rpL32 signals as a loading control, are shown at the bottom.

  • FIG. 4.
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    FIG. 4.

    DNase I-HS mapping in the BeWo, CTB, and STB chromatins. Nuclei from the indicated cells were digested with DNase I, genomic DNA was purified from each sample, and the DNAs were digested with EcoRI and subjected to Southern blot hybridization analysis. The positions corresponding to HSIII, HSIV, and HSV are indicated by arrows at the left. An open arrowhead points to a nonspecific band that was detected before the DNase I treatment (time zero). At the bottom is a diagram of the EcoRI fragment showing the probe position and the sizes of each fragment after DNase I digestion. The results reveal the presence of HSIV and the placenta-specific HS in day 0 and 32 BeWo cells as well as in primary CTBs and STBs. HSIV is absent from the parallel analysis of the human fibroblast line CCDsk-25, which does not express any of the hGH cluster genes. A diagram of the relative fragment sizes is at the bottom.

  • FIG. 5.
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    FIG. 5.

    Histone modifications at the hGH cluster and its LCR in BeWo cells during hGH-hCS activation. (A) Positions of amplimers used in the ChIP assays. The structure of the hGH cluster, linked genes, and the hGH LCR are depicted. P-elements and the putative hCS enhancers are indicated (shaded and open ovals, respectively). Shaded and striped rectangles indicate extensive conserved segments among the PGR units and the hGH-N gene. The amplimer names and their positions are shown below the map. The PGR unit is also shown in an expanded format. (B) The histone H3K4 dimethylation pattern in BeWo cells was established prior to gene activation and did not change after long-term culture. Soluble chromatin was collected from BeWo cells at days 0 and 32 of culture by digesting nuclei with micrococcal nuclease. The ChIP analysis was conducted with anti-dimethylated-histone H3K4 antibody, and the resulting input and bound fractions were subjected to PCR amplification. The bound/input signal ratio at each amplicon (A) was normalized to that at the GAPDH promoter, which was considered 100. The relative histone modification levels in day 0 (shaded bars) and day 32 (black rectangles) BeWo cells are shown. Standard error values are indicated. The α-globin promoter was used as a negative control. (C) Histone H3K4 trimethylation was detected at low levels across the entire locus in BeWo cells at both day 0 and day 32. Histone H3K4 trimethylation patterns, examined by ChIP analysis with anti-trimethylated-H3K4 antibody, were analyzed and plotted as described for panel B. (D) Histone H3 acetylation was significantly induced across the locus during the 32 days of BeWo cell culture. Histone H3 acetylation patterns, using anti-acetylated-histone H3 antibody, were studied as described for panel B. (E) Histone H4 acetylation was significantly induced across the locus during BeWo cell culture. The ChIP assay was performed, analyzed, and plotted as described for panel B but with anti-acetyl histone H4 antibody.

  • FIG. 6.
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    FIG. 6.

    Histone modification at the hGH cluster and its LCR in primary CTBs before and after 4 days of differentiation. (A) Histone H3K4 dimethylation was established after day 4 of culture in primary CTBs. The amplimer positions are the same as those in Fig. 5A. Primary CTBs were isolated from human term placentas and cultured for 4 days in the presence of second-trimester maternal serum. The ChIP assay was performed with anti-dimethylated-histone H3K4 antibody as described for Fig. 5B on chromatin from freshly prepared CTBs (day 0) and after culture (day 4). For comparison, corresponding values for modifications of chromatin isolated from primary placental STBs, previously reported by us (32), are shown. (B) The histone H3K4 trimethylation pattern was largely preset in the freshly prepared, day 0 CTBs. The histone H3K4 trimethylation pattern was examined by ChIP with anti-trimethylated-H3K4 antibody, analyzed, and labeled. (C) Histone H3 acetylation was induced at the hGH locus during differentiation from CTBs to STBs. The histone H3 acetylation patterns were determined by ChIP with anti-acetylated-histone H3 antibody. (D) Histone H4 acetylation was induced at the hGH locus during differentiation of the CTBs. The histone H4 acetylation levels were investigated by ChIP with anti-acetylated-histone H4 antibody. (E) All genes in the hGH cluster were similarly modified in the day 4 CTBs. Histone modification levels at each cluster gene were examined by ChIP. The PCR analysis of the isolated DNA was performed with an amplimer set common to the five genes; the amplified products were digested with four restriction enzymes to distinguish each signal.

  • FIG. 7.
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    FIG. 7.

    Summary of epigenetic modifications during the transition of human placental CTBs to STBs. (Top) The histone modification patterns in freshly prepared primary CTBs are diagrammed below the map. Prior to terminal STB differentiation, all the placental LCR HSs were already formed and the placental genes were expressed at trace levels, whereas hGH-N was totally inactive. Moderate levels of histone H3K4 dimethylation were observed at discrete regions, including HSV, the sites of the promoters of the placental genes, and the sites of the putative enhancers. Histone H3K4 trimethylation was also established at this point within the PGR regions. In contrast, only minimum levels of H3 acetylation were observed across the locus, and H4 acetylation was limited to HSV and at the placental-gene promoters. (Middle) After 4 days of culture, most of the CTBs fused to form a syncytium and the expression of the placental genes, especially hCS-A and hCS-B, was dramatically enhanced. Histone H3K4 di- and trimethylation patterns were well established, and the histone H3/H4 acetylation levels increased modestly at the LCR and at the cluster region in a block encompassing the four placental genes. (Bottom) In the full-term placental STBs, histone H3/H4 acetylation increased to maximum levels and the epigenetic patterns necessary for full activation of the placental genes were completed. The four placental genes are expressed at the highest levels, whereas hGH-N, lacking the epigenetic modifications, remains inactive in STBs.

  • FIG. 8.
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    FIG. 8.

    HSIII-HSV is insufficient to activate hCS-A expression in the transgenic placenta. (A) Transgene constructs. Each of the two transgene constructs is shown below the map of the hGH locus. Each of the four P-elements was named to correspond with its adjacent gene's name (Pl, Pa, Pv, and Pb), and the three enhancers were named similarly (El, Ea, and Eb). The hGH/BAC transgene encompasses the entire region. The HSIII-V/Pa(CSA)Ea transgene is composed of an 11.5-kb fragment encompassing HSV through HSIII ligated directly to a 7.5-kb hCS-A gene fragment that includes its contiguous 5′ and 3′ sequences, as shown. Sets of transgenic mouse lines were generated with each of these two constructs. (B) Expression of the hGH cluster genes in the transgenic placentas. Four lines of mice carrying the HSIII-V/Pa(CSA)Ea transgene, each with a unique transgene insertion site, were generated and studied (1196D, 1197C, 1199E, and 1200D). Similarly, four unique transgenic lines carrying hGH/BAC were established and studied (1210B, 1252B, 1253E, 1254D). Total RNAs were purified from the transgenic placentas of the indicated lines and subjected to Northern blot analysis. The transgene copy number in each line is indicated at the bottom of each lane. The probes for 18S rRNA and mouse placental lactogen II (PLII) were used as controls. Although robust and copy-number-dependent hGH-hCS expression was observed for all four hGH/BAC lines, no signals were detected for any of the HSIII-V/Pa(CSA)Ea lines at the level of Northern blot sensitivity. (C) Comparison of the hCS-A expression levels in transgenic placentas. RT-PCR analysis was performed to amplify the hCS-A and hCS-B mRNAs using total RNAs isolated from placentas of the indicated transgenic lines. The signal intensity for hCS-A was normalized to that of β-actin as well as to the transgene copy numbers noted in panel B. The calculated relative expression levels are plotted in the frame below. The hGH/BAC lines showed strong site-of-integration-independent and copy-number-dependent expression of hCS-A in placenta. In contrast, expression in the HSIII-V/Pa(CSA)Ea lines was quite low and showed marked position effects. (D) The HSIII-V/Pa(CSA) gene failed to retain placental specificity. Northern blot analysis was performed with RNAs prepared from the indicated tissues. The tissues were isolated from the lines with the highest transgene copy number for each construct. Line 1251F (hGH/BAC) had 35 copies of the transgene; line 1196C (HSIII-V/Pa(CSA)Ea) had 63 copies. The oligoprobe for 18S rRNA was used as a loading control. hCS-A expression is predominantly placenta specific in the hGH/BAC line but is ectopically expressed at high levels in kidneys of the HSIII-V/Pa(CSA)Ea mice.

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Epigenetic Activation of the Human Growth Hormone Gene Cluster during Placental Cytotrophoblast Differentiation
Atsushi P. Kimura, Daria Sizova, Stuart Handwerger, Nancy E. Cooke, Stephen A. Liebhaber
Molecular and Cellular Biology Aug 2007, 27 (18) 6555-6568; DOI: 10.1128/MCB.00273-07

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Epigenetic Activation of the Human Growth Hormone Gene Cluster during Placental Cytotrophoblast Differentiation
Atsushi P. Kimura, Daria Sizova, Stuart Handwerger, Nancy E. Cooke, Stephen A. Liebhaber
Molecular and Cellular Biology Aug 2007, 27 (18) 6555-6568; DOI: 10.1128/MCB.00273-07
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KEYWORDS

cell differentiation
Epigenesis, Genetic
Human Growth Hormone
placenta
Trophoblasts

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